US2012322109A1PendingUtilityA1

Covalent Joining of DNA Strands to RNA Strands Catalyzed by Vaccinia Topoisomerase

Assignee: SHUMAN STEWARTPriority: Jun 12, 1997Filed: Apr 30, 2012Published: Dec 20, 2012
Est. expiryJun 12, 2017(expired)· nominal 20-yr term from priority
C07H 21/04C12N 15/1006C12N 9/90C12Y 599/01002C12N 15/1096C07H 21/02
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Claims

Abstract

The present invention provides a method of covalently joining a DNA strand to an RNA strand, a method of tagging a 5′ end of an RNA molecule, a DNA-RNA molecule which has been joined in vitro by the use of a topoisomerase, a method of tagging a 5′ end of an mRNA, and a method of isolating and cloning full-length gene sequences using capped mRNA after subtraction of non-capped RNA.

Claims

exact text as granted — not AI-modified
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         10 . A topoisomerase-DNA intermediate molecule comprising one or more 5′ single-strand tails. 
     
     
         11 . The topoisomerase-DNA intermediate molecule of  claim 10 , wherein the 5′ single-strand tail comprises a specific sequence. 
     
     
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         18 . A DNA-RNA molecule covalently joined by topoisomerase catalysis. 
     
     
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         23 . A covalently joined DNA-RNA molecule having a labeled 5′ end. 
     
     
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         38 . A 5′ end tagged RNA molecule. 
     
     
         39 . The 5′ end tagged RNA molecule of  claim 38 , wherein the tag is a DNA sequence. 
     
     
         40 . The 5′ end tagged RNA molecule of  claim 39 , further comprising a 5′ end label. 
     
     
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         44 . A DNA-RNA molecule which has been joined in vitro by the use of a topoisomerase. 
     
     
         45 . A method of obtaining full-length gene sequences comprising:
 (a) isolating full-length mRNA:   (b) attaching a DNA tag sequence to the isolated mRNA; and   (c) synthesizing cDNA using the tagged mRNA as a template.   
     
     
         46 . A method of  claim 45 , wherein the mRNA is isolated by employing an affinity purification material. 
     
     
         47 . A method of  claim 46 , wherein the mRNA to be isolated comprises an affinity purification tagged cap structure. 
     
     
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         67 . An isolated full-length gene sequence prepared by the method of  claim 45 . 
     
     
         68 . A nucleic acid construct comprising an isolated fulllength gene sequence prepared of the method of  claim 45  and an expression vector. 
     
     
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         79 . A method of obtaining full-length gene sequences 5 comprising:
 (a) isolating full-length mRNA by employing an affinity purification material;   (b) decapping and dephosphorylating the isolated mRNA;   (c) attaching a DNA tag sequence to the decapped, dephosphorylated mRNA, wherein the tag sequence comprises the sequence shown in  FIG. 11  and is attached by vaccinia DNA topoisomerase;   (d) synthesizing cDNA using the tagged mRNA as a template;   (e) amplifying the synthesized cDNA, wherein the amplification primers comprise an anti-coding sequence of the tag sequence (5′) and a gene specific sequence (3′); and   (f) inserting the amplified cDNA into an expression vector.

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