US2016368966A1PendingUtilityA1
NOVEL a4B7 PEPTIDE DIMER ANTAGONISTS
Assignee: PROTAGONIST THERAPEUTICS INCPriority: Oct 11, 2012Filed: Jan 19, 2016Published: Dec 22, 2016
Est. expiryOct 11, 2032(~6.3 yrs left)· nominal 20-yr term from priority
A61P 37/06A61P 3/10A61P 43/00A61P 35/00A61P 29/00A61P 11/02A61P 1/00A61P 11/06A61P 11/00A61P 1/18A61P 1/04A61P 1/16C07K 7/06C07K 14/47A61K 38/00C07K 7/08C07K 14/70546
50
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Claims
Abstract
The invention relates to disulfide-rich dimer molecules which inhibit binding of α4β7 to the mucosal addressin cell adhesion molecule (MAdCAM) in vivo, and show high selectivity against α4β1 binding.
Claims
exact text as granted — not AI-modifiedWhat is claimed is:
1 . A peptide dimer compound comprising two peptide monomer subunits of Formula (I)
Xaa 1 -Xaa 2 -Xaa 3 -Xaa 4 -Xaa 5 -Xaa 6 -Xaa 7 -Xaa 8 -Xaa 9 -Xaa 10 -Xaa 11 -Xaa 12 -Xaa 13 -Xaa 14 -Xaa 15 (I),
or a pharmaceutically acceptable salt thereof, wherein Xaa 1 is selected from the group consisting of a suitable linker moiety, absent, hydrogen, Ac—, Gln, Asn, Asp, Pro, Gly, His, Ala, Ile, Phe, Lys, Arg, Asn, Glu, Leu, Val, Tye, Trp, Met, Thr, a suitable isostere, a corresponding D-amino acid, and a suitable linker moiety; Xaa 2 is selected from the group consisting of Ac—, NH 2 , a suitable linker moiety, absent, Gln, Asn, Asp, Pro, Gly, His, Ala, Ile, Phe, Lys, Arg, Asn, Glu, Leu, Val, Tye, Trp, Met, Thr, a suitable isostere, a suitable linker moiety, and a corresponding D-amino acid; Xaa 3 is selected from the group consisting of Ac—, NH 2 , a suitable linker moiety, Gln, Asn, Asp, Pro, Gly, His, Ala, Ile, Phe, Lys, Arg, Asn, Glu, Leu, Val, Tye, Trp, Met, Thr, a suitable isostere, a suitable linker moiety, and a corresponding D-amino acid; Xaa 4 is selected from the group consisting of Cys, Pen, Asp, Glu, hGlu, Lys, homo-Lys, Orn, Dap, Dab, a suitable isostere, and a corresponding D-amino acid; Xaa 5 is selected from the group consisting of Gln, Asn, Asp, Pro, Gly, His, Ala, Ile, Phe, Lys, Arg, Asn, Glu, Leu, Val, Tye, Trp, Met, Thr, homo-Arg, Dap, Dab, N-Me-Arg, Arg-(Me)sym, Arg-(me)asym, 4-Guan, Cit, Cav, a suitable isostere, and a corresponding D-amino acid; Xaa 6 is selected from the group consisting of Ser, Gln, Asn, Asp, Pro, Gly, His, Ala, Ile, Phe, Lys, Arg, Asn, Glu, Leu, Val, Tye, Trp, Met, a suitable isostere replacement and a corresponding D-amino acid; Xaa 7 is selected from the group consisting of Asp, N-Me-Asp, a suitable isostere replacement for Asp, and a corresponding D-amino acid; Xaa 8 is selected from the group consisting of Thr, Gln, Ser, Asn, Asp, Pro, Gly, His, Ala, Ile, Phe, Lys, Arg, Asn, Glu, Val, Tye, Trp, Met, an N-Methyl amino acid; a suitable isostere, and a corresponding D-amino acid; Xaa 9 is selected from the group consisting of Gln, Asn, Asp, Pro, Gly, Ala, Phe, Leu, Asn, Glu, Val, homo-Leu, n-Butyl Ala, n-Pentyl Ala, n-Hexyl Ala, N-Me-Leu, a suitable isostere, and a corresponding D-amino acid; Xaa 10 is selected from the group consisting of Cys, Asp, Pen, Lys, homo-Lys, Orn, GluDap, Dab, a suitable isostere, and a corresponding D-amino acid; Xaa 11 is selected from the group consisting of Gly, Gln, Asn, Asp, Ala, Ile, Leu, Val, Met, Thr, Lys, Trp, Tyr, CONH 2 , His, Glu, Ser, Arg, Pro, Phe, Sar, 1Nal, 2Nal, hPhe, Phe(4-F), O-Me-Tyr, dihydro-Trp, Dap, Dab, Dab(Ac), Orn, D-Orn, N-Me-Orn, N-Me-Dap, D-Dap, D-Dab, Bip, Ala(3,3diphenyl), Biphenyl-Ala, an aromatic ring substituted Phe, an aromatic ring substituted Trp, an aromatic ring substituted His, a hetero aromatic amino acid, N-Me-Lys, N-Me-Lys(Ac), 4-Me-Phe, a corresponding D-amino acid; a suitable isostere; and a suitable linker moiety. Xaa 12 is selected from the group consisting of Glu, Amide, Lys, COOH, CONH 2 , Gln, Pro, Gly, His, Ala, Ile, Phe, Lys, Arg, Leu, Val, Tye, Trp, Met, Gla, Ser, Asn, Dap, Dab, Orn, D-Orn, N-Me-Orn, N-Me-Dap, N-Me-Dab, N-Me Lys, D-Dap, D-Dab, a suitable isostere, a suitable linker moiety, and a corresponding D-amino acid; Xaa 13 is selected from the group consisting of Gln, Pro, Gly, His, Ala, Ile, Phe, Lys, Arg, Leu, Val, Tye, Trp, Met, Glu, Gla, Ser, Asn, Dap, Dab, Orn, D-Orn, N-Me-Orn, N-Me-Dap, N-Me-Dab, N-Me Lys, D-Dap, D-Dab, COOH, CONH 2 , NH 2 , absent, a suitable linker moiety, a suitable isostere, and a corresponding D-amino acid; Xaa 14 is selected from the group consisting of a natural amino acid, absent, COOH, CONH 2 , NH 2 , a suitable isostere, a suitable linker, a corresponding D-amino acid, and an N-Methyl amino acid; and Xaa 15 is selected from the group consisting of a suitable linker, and absent.
2 . The peptide dimer compound of claim 1 , wherein when Xaa 1 is absent, Xaa 2 is selected from the group consisting of Ac, NH 2 and a suitable linker.
3 . The peptide dimer compound of claim 1 , wherein when Xaa 1 and Xaa 2 are absent, Xaa 3 is selected from the group consisting of Ac, NH 2 and a suitable linker.
4 . The peptide dimer compound of claim 1 , wherein when Xaa 10 is selected from the group consisting of Lys, homo-Lys, Orn, Dap, and Dab, Xaa 4 is selected from the group consisting of Asp, Glu, and hGlu, and when Xaa 10 is selected from the group consisting of Asp, Glu, and hGlu, Xaa 4 is selected from the group consisting of Lys, homo-Lys, Orn, Dap, and Dab.
5 . The peptide dimer compound of claim 1 , wherein when Xaa 4 and Xaa 10 are selected from the group consisting of Cys and Pen, Xaa 4 and Xaa 10 are cyclized through a disulfide bond.
6 . The peptide dimer compound of claim 1 , wherein when Xaa 4 is selected from the group consisting of Lys, homo-Lys, Orn, Dap, and Dab, and when Xaa 10 is selected from the group consisting of Asp, Glu, and hGlu, Xaa 4 and Xaa 10 are cyclized through an amide bond.
7 . The peptide dimer compound of claim 1 , wherein the suitable linker is selected from the group consisting of DIG, DIG-OH, PEG13, PEG25, PEG1K, PEG2K, PEG3.4K, PEG4K, PEG5K, IDA, IDA-Palm, IDA-Boc, IDA-Isovaleric acid, Triazine, Triazine-Boc, Isophthalic acid, 1,3-phenylenediacetic acid, 1,4-phenylenediacetic acid, glutaric acid, Azelaic acid, Pimelic acid, Dodecanedioic acid, suitable aliphatics, suitable aromatics, heteroaromatics, and polyethylene glycols having a molecular weight from approximately 400 Da to approximately 40,000 Da.
8 . A method for treating a patient afflicted with a condition that is associated with a biological function of α4β7, the method comprising administering to the patient an effective amount of a peptide dimer compound of claim 1 .
9 . The method of claim 8 , wherein the condition is an inflammatory bowel disease.
10 . The method of claim 9 , wherein the inflammatory bowel disease is ulcerative colitis or Crohn's disease.
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18 . The method of claim 8 , wherein the peptide dimer is selected from the group consisting of SEQ ID NO: 39-136.
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23 . A method for stabilizing a peptide dimer compound according to claim 1 , the method comprising a step for substituting Xaa 4 and Xaa 10 with an amino acid residue selected from the group consisting of Cys and Pen, wherein Xaa 4 and Xaa 10 form a cyclized structure through a disulfide bond.
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27 . A pharmaceutical composition comprising a peptide dimer compound according to at least one of Formula (I) and Formula (II).
28 . The composition of claim 27 , further comprising an enteric coating.
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36 . The method of claim 8 , wherein the condition is selected from the group consisting of Inflammatory Bowel Disease (IBD), ulcerative colitis, Crohn's disease, Celiac disease (nontropical Sprue), enteropathy associated with seronegative arthropathies, microscopic colitis, collagenous colitis, eosinophilic gastroenteritis, radiotherapy, chemotherapy, pouchitis resulting after proctocolectomy and ileoanal anastomosis, gastrointestinal cancer, pancreatitis, insulin-dependent diabetes mellitus, mastitis, cholecystitis, cholangitis, pericholangitis, chronic bronchitis, chronic sinusitis, asthma, and graft versus host disease.
37 . The method of claim 8 , wherein the peptide dimer is administered to the individual by a form of administration selected from the group consisting of oral, intravenous, peritoneal, intradermal, subcutaneous, intramuscular, intrathecal, inhalation, vaporization, nebulization, sublingual, buccal, parenteral, rectal, vaginal, and topical.
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42 . (canceled)Cited by (0)
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