Microfabricated crossflow devices and methods

Abstract

This invention provides microfabricated devices and methods for detecting, analyzing and sorting biological materials and particles. Droplets containing the particles are provided in an extrusion fluid, passed through a detection region, and then directed into a branch channel according to predetermined characteristics. For example, cells or viral particles contained in droplets of aqueous solvent are flowed past a detector in the nonpolar extrusion fluid decane, and routed into a selected branch channel for subsequent analysis or use.

1 . (canceled) 
     
     
         2 . A method of making droplets in a microfluidic device, comprising flowing an extrusion fluid through a first input channel while flowing a sample fluid through a second input channel,
 wherein the sample fluid is immiscible with the extrusion fluid, wherein the extrusion fluid is an oil that comprises a surfactant as an additive,   wherein the first input channel and the second input channel form a junction at an angle of about 60 to about 120 degrees,   wherein the junction is constructed and arranged so that sample fluid droplets are introduced into the extrusion fluid,   wherein the first and second input channels have diameters between about 2 and 100 microns or cross-sectional dimensions in the range of 1 to 100 microns.   
     
     
         3 . The method of  claim 2 , wherein the first input channel and the second input channel form a junction that is substantially perpendicular. 
     
     
         4 . The method of  claim 2 , comprising flowing the extrusion fluid through the first input channel at a first pressure while flowing the sample fluid through the second input channel at a second pressure. 
     
     
         5 . The method of  claim 2 , wherein the microfluidic device first and second input channels are formed in a single layer of a multilayer elastomeric device. 
     
     
         6 . The method of  claim 2 , wherein the microfluidic device further comprises a second droplet extrusion region downstream from said junction. 
     
     
         7 . The method of  claim 2 , wherein the microfluidic device further comprises a detection region downstream from said junction. 
     
     
         8 . The method of  claim 2 , wherein the second inlet channel is tapered towards the junction. 
     
     
         9 . The method of  claim 2 , wherein the sample fluid comprises beads. 
     
     
         10 . The method of  claim 2 , wherein the sample fluid comprises cells. 
     
     
         11 . The method of  claim 2 , wherein: the sample fluid is an aqueous solution. 
     
     
         12 . The method of  claim 2 , wherein at the junction, the sample fluid flows at a pressure that is higher than that of the extrusion fluid. 
     
     
         13 . The method of  claim 2 , wherein the sample fluid is introduced into the extrusion fluid as single monodisperse droplets. 
     
     
         14 . The method of  claim 2 , wherein the droplets are introduced into the extrusion fluid with regular periodicity. 
     
     
         15 . The method of  claim 2 , wherein the sample fluid droplets contain a biological material. 
     
     
         16 . The method of  claim 2 , wherein the sample fluid droplets contain a polynucleotide or an enzyme or both. 
     
     
         17 . The method of  claim 2 , wherein the sample fluid droplets contain a reporter molecule. 
     
     
         18 . The method of  claim 17 , wherein the reporter molecule is a fluorescent agent. 
     
     
         19 . The method of  claim 2 , further comprising detecting signal produced by a chemical reaction of a substrate catalyzed by an enzyme in the sample fluid droplets. 
     
     
         20 . The method of  claim 2 , further comprising detecting signal produced by a polymerase chain reaction in the sample fluid droplets. 
     
     
         21 . A combination comprising a microfluidic device, a sample fluid, and an extrusion fluid immiscible with the sample fluid,
 wherein the extrusion fluid is an oil that comprises a surfactant as an additive;   wherein the microfluidic device comprises a first inlet channel and a second inlet channel that are in fluid communication at a junction;   wherein the second inlet channel is connected to a source of the sample fluid and the first inlet channel is connected to a source of the extrusion fluid;   wherein the first and second inlet channels have a diameter in the range of 2 to 100 microns or cross-sectional dimensions in the range of 1 to 100 microns;   wherein the first input channel and the second input channel form a junction at an angle of about 60 to about 120 degrees, and   wherein the junction is configured such that when a sample fluid is flowed through the second channel while an extrusion fluid that is immiscible with the sample fluid is flowed through the first channel, droplets of the sample fluid are introduced into the extrusion fluid.   
     
     
         22 . The combination of  claim 21 , wherein the first input channel and the second input channel form a junction of about 90 degrees. 
     
     
         23 . The combination of  claim 21 , wherein the microfluidic device first and second input channels are formed in a single layer of a multilayer elastomeric device. 
     
     
         24 . The combination of  claim 21 , wherein the microfluidic device further comprises a second droplet extrusion region downstream from said junction. 
     
     
         25 . The combination of  claim 21 , wherein the microfluidic device further comprises a detection region downstream from said junction. 
     
     
         26 . The combination of  claim 21 , configured so that the sample fluid flows at a pressure that is higher than that of the extrusion fluid at the junction. 
     
     
         27 . A method for providing a combination according to  claim 21 , comprising: forming the first inlet channel, the second inlet channel, and the junction in an elastomer chip, thereby producing said microfluidic device; then
 connecting the second inlet channel to a source of sample fluid and connecting the second input channel to a source of extrusion fluid.