Efficient and scalable synthesis of 2-(1'H-Indole-3'-Carbonyl)-thiazole-4-carboxylic acid methyl ester and its structural analogs

Abstract

Methods of synthesizing 2−(1′H-indole-3′-carbonyl)-thiazole-4-carboxylic acid methyl ester (ITE) and structural analogs thereof. The methods include condensation reactions or condensation and oxidation reactions to form the thiazoline or thiazole moiety of ITE or its structural analogs.

1 - 20 . (canceled) 
     
     
         21 . A compound of Formula II, or a salt thereof: 
       
         
           
           
               
               
           
         
         wherein W is selected from the group consisting of oxygen (O) and sulfur (S); and 
         R 1 , R 2 , R 3 , R 4  R 5  and R N  are each independently selected from the group consisting of hydrogen, deuterium, halo, amino, hydroxy, cyano, formyl, nitro, alkyl, haloalkyl, alkenyl, haloalkenyl, alkynyl, haloalkynyl, alkoxy, haloalkoxy, thioalkoxy, halothioalkoxy, alkanoyl, haloalkanoyl, thioalkanoyl, halothioalkanoyl, carbonyloxy, halocarbonyloxy, carbonylthio, halocarbonylthio, thiocarbonyloxy, halothiocarbonyloxy, thiocarbonylthio, halothiocarbonylthio, and —S(O) n R 8  (n=0 to 2, R 8  is directly connected to S), wherein R 8  is selected from the group consisting of hydrogen, deuterium, halo, amino, hydroxy, thiol, cyano, formyl, alkyl, haloalkyl, alkenyl, haloalkenyl, alkynyl, haloalkynyl, alkoxy, haloalkoxy, thioalkoxy, halothioalkoxy, alkanoyl, haloalkanoyl, thioalkanoyl, halothioalkanoyl, carbonyloxy, halocarbonyloxy, carbonylthio, halocarbonylthio, thiocarbonyloxy, halothiocarbonyloxy, thiocarbonylthio, and halothiocarbonylthio. 
       
     
     
         22 . The compound of  claim 21 , wherein W is oxygen (O). 
     
     
         23 . A compound of Formula V, or a salt thereof: 
       
         
           
           
               
               
           
         
         wherein W and Y are each independently selected from the group consisting of oxygen (O) and sulfur (S); and 
         R 1 , R 2 , R 3 , R 4 , R 5 , and R N  are each independently selected from the group consisting of hydrogen, deuterium, halo, amino, hydroxy, cyano, formyl, nitro, alkyl, haloalkyl, alkenyl, haloalkenyl, alkynyl, haloalkynyl, alkoxy, haloalkoxy, thioalkoxy, halothioalkoxy, alkanoyl, haloalkanoyl, thioalkanoyl, halothioalkanoyl, carbonyloxy, halocarbonyloxy, carbonylthio, halocarbonylthio, thiocarbonyloxy, halothiocarbonyloxy, thiocarbonylthio, halothiocarbonylthio, and —S(O) n R 8  (n=0 to 2, R 8  is directly connected to S), wherein R 8  is selected from the group consisting of hydrogen, deuterium, halo, amino, hydroxy, thiol, cyano, formyl, alkyl, haloalkyl, alkenyl, haloalkenyl, alkynyl, haloalkynyl, alkoxy, haloalkoxy, thioalkoxy, halothioalkoxy, alkanoyl, haloalkanoyl, thioalkanoyl, halothioalkanoyl, carbonyloxy, halocarbonyloxy, carbonylthio, halocarbonylthio, thiocarbonyloxy, halothiocarbonyloxy, thiocarbonylthio, and halothiocarbonylthio. 
       
     
     
         24 . The compound of  claim 23 , wherein W and Y are each oxygen (O). 
     
     
         25 . The compound of  claim 23 , wherein W and Y are oxygen (O) and sulfur (S), respectively. 
     
     
         26 . A method of synthesizing a compound, comprising condensing a compound of Formula II to yield a framework containing an indole and thiazoline or a framework containing an indole and thiazole, wherein:
 Formula II is:   
       
         
           
           
               
               
           
         
       
       or a salt thereof,
 W is selected from the group consisting of oxygen (O) and sulfur (S); and 
 R 1 , R 2 , R 3 , R 4 , R 5 , are each independently selected from the group consisting of hydrogen, deuterium, halo, amino, hydroxy, cyano, formyl, nitro, alkyl, haloalkyl, alkenyl, haloalkenyl, alkynyl, haloalkynyl, alkoxy, haloalkoxy, thioalkoxy, halothioalkoxy, alkanoyl, haloalkanoyl, thioalkanoyl, halothioalkanoyl, carbonyloxy, halocarbonyloxy, carbonylthio, halocarbonylthio, thiocarbonyloxy, halothiocarbonyloxy, thiocarbonylthio, halothiocarbonylthio, and —S(O) n R 8  (n=0 to 2, R 8  is directly connected to S), wherein R 8  is selected from the group consisting of hydrogen, deuterium, halo, amino, hydroxy, thiol, cyano, formyl, alkyl, haloalkyl, alkenyl, haloalkenyl, alkynyl, haloalkynyl, alkoxy, haloalkoxy, thioalkoxy, halothioalkoxy, alkanoyl, haloalkanoyl, thioalkanoyl, halothioalkanoyl, carbonyloxy, halocarbonyloxy, carbonylthio, halocarbonylthio, thiocarbonyloxy, halothiocarbonyloxy, thiocarbonylthio, and halothiocarbonylthio. 
 
     
     
         27 . The method of  claim 26 , wherein the condensing is conducted in the presence of an aprotic solvent. 
     
     
         28 . The method of  claim 27 , wherein the aprotic solvent is selected from the group consisting of N,N-dimethylformamide, dimethyl sulfoxide, pyridine, and dioxane. 
     
     
         29 . The method of  claim 26 , wherein the condensing is conducted in the presence of a base. 
     
     
         30 . The method of  claim 29 , wherein the base is selected from the group consisting of 1,8-diazabicyclo[5.4.0]undec-7-ene, NaHCO 3 , Na 2 CO 3 , and triethylamine. 
     
     
         31 . The method of  claim 26 , wherein the condensing is conducted at a temperature of from about 25° C. to about 65° C. 
     
     
         32 . The method of  claim 26 , wherein R N  is an amino protecting group. 
     
     
         33 . The method of  claim 32 , wherein the amino protecting group forms a group selected from the group consisting of an alkyl carbamate, allyl carbamate (Alloc), t-butyl carbamate (BOC), 9-fluorenylmethyl carbamate (FMOC), benzyl carbamate (Cbz), acetamide, chloroacetamide, trifluoroacetamide (TFA), phthalimide, benzylamine, triphenylmethylamine (tritylamine), benzylideneamine, p-toluenesulfonamide, and tosylamide. 
     
     
         34 . The method of  claim 26 , wherein W is oxygen (O). 
     
     
         35 . The method of  claim 26 , further comprising oxidizing an intermediate after condensing. 
     
     
         36 . The method of  claim 35 , wherein the oxidizing is conducted in the presence of an oxidant selected from the group consisting of air, manganese dioxide, N-bromosuccinimide, 1,8-diazabicyclo[5.4.0]undec-7-ene, N-bromosuccinimide together with benzoyl peroxide, and N-bromosuccinimide together with 1,8-diazabicyclo[5.4.0]undec-7-ene. 
     
     
         37 . The method of  claim 35 , wherein the oxidizing is conducted in the presence of a solvent selected from the group consisting of dimethylformamide, tetrahydrofuran, dimethyl sulfoxide, dichloromethane, and pyridine. 
     
     
         38 . The method of  claim 35 , wherein the oxidizing is conducted at a temperature of from about 30° C. to about 90° C. 
     
     
         39 . The method of  claim 35 , wherein the oxidizing is conducted without substantial isolation of the compound of Formula IV from a reaction mixture in which the compound of Formula IV was synthesized. 
     
     
         40 . The method of  claim 35 , wherein the oxidizing comprises adding an oxidant directly to the reaction mixture or a diluted reaction mixture comprising the reaction mixture diluted with solvent. 
     
     
         41 . The method of  claim 35 , further comprising, after the condensing and prior to the oxidizing, diluting the reaction mixture by an amount of at least about 2-fold. 
     
     
         42 . The method of  claim 35 , further comprising, after the condensing and prior to the oxidizing, cooling the reaction mixture or a diluted reaction mixture comprising the reaction mixture diluted with solvent from a condensation reaction temperature at which the condensing is conducted to a cooled temperature, wherein the cooled temperature is at least about 10° C. lower than the condensation reaction temperature. 
     
     
         43 . The method of  claim 42 , further comprising adding an oxidant to the reaction mixture or the diluted reaction mixture when the reaction mixture or the diluted reaction mixture is at the cooled temperature. 
     
     
         44 . The method of  claim 43 , further comprising, after the cooling, heating the reaction mixture or the diluted reaction mixture from the cooled temperature to a heated temperature and conducting the oxidizing at the heated temperature, wherein the heated temperature is at least about 10° C. higher than the cooled temperature. 
     
     
         45 . The method of  claim 42 , wherein the oxidizing is conducted at the cooled temperature. 
     
     
         46 . A method of synthesizing a compound comprising condensing a compound of Formula V to yield a framework containing an indole and thiazoline or a framework containing an indole and thiazole, wherein:
 Formula V is:   
       
         
           
           
               
               
           
         
       
       or a salt thereof;
 W and Y are each independently selected from the group consisting of oxygen (O) and sulfur (S); and 
 R 1 , R 2 , R 3 , R 4 , R 5 , and R N  are each independently selected from the group consisting of hydrogen, deuterium, halo, amino, hydroxy, cyano, formyl, nitro, alkyl, haloalkyl, alkenyl, haloalkenyl, alkynyl, haloalkynyl, alkoxy, haloalkoxy, thioalkoxy, halothioalkoxy, alkanoyl, haloalkanoyl, thioalkanoyl, halothioalkanoyl, carbonyloxy, halocarbonyloxy, carbonylthio, halocarbonylthio, thiocarbonyloxy, halothiocarbonyloxy, thiocarbonylthio, halothiocarbonylthio, and —S(O) n R 8  (n=0 to 2, R 8  is directly connected to S), wherein R 8  is selected from the group consisting of hydrogen, deuterium, halo, amino, hydroxy, thiol, cyano, formyl, alkyl, haloalkyl, alkenyl, haloalkenyl, alkynyl, haloalkynyl, alkoxy, haloalkoxy, thioalkoxy, halothioalkoxy, alkanoyl, haloalkanoyl, thioalkanoyl, halothioalkanoyl, carbonyloxy, halocarbonyloxy, carbonylthio, halocarbonylthio, thiocarbonyloxy, halothiocarbonyloxy, thiocarbonylthio, and halothiocarbonylthio; and 
 
       wherein the condensing is conducted in a protic solvent. 
     
     
         47 . The method of  claim 46 , wherein the condensing is conducted in a solvent selected from the group consisting of an alcohol, an alcohol together with water, an alcohol together with an acid, an acid, an alcohol together with an aprotic solvent, or water together with an aprotic solvent. 
     
     
         48 . The method of  claim 46 , wherein the condensing is conducted at a temperature of about 50° C. to about 70° C. 
     
     
         49 . The method of  claim 46 , wherein W and Y are each oxygen (O). 
     
     
         50 . The method of  claim 46 , wherein W and Y are oxygen (O) and sulfur (S), respectively. 
     
     
         51 . The method of  claim 46 , wherein R N  is an amino protecting group. 
     
     
         52 . The method of  claim 51 , wherein the amino protecting group forms a group selected from the group consisting of an alkyl carbamate, allyl carbamate (Alloc), t-butyl carbamate (BOC), 9-fluorenylmethyl carbamate (FMOC), benzyl carbamate (Cbz), acetamide, chloroacetamide, trifluoroacetamide (TFA), phthalimide, benzylamine, triphenylmethylamine (tritylamine), benzylideneamine, p-toluenesulfonamide, and tosylamide.