US2019218511A1PendingUtilityA1

Methods and compositions for targeting progenitor cell lines

Assignee: MANDALA BIOSCIENCES LLCPriority: Aug 22, 2012Filed: Jan 22, 2019Published: Jul 18, 2019
Est. expiryAug 22, 2032(~6.1 yrs left)· nominal 20-yr term from priority
C07K 7/08C12N 5/0606
56
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Claims

Abstract

The invention provides methods, compositions and kits for the identification and enrichment of progenitor cell lines obtained from pluripotent stem cells.

Claims

exact text as granted — not AI-modified
1 . A method of enriching a population of progenitor cells, wherein the progenitor cell is the in vitro progeny of pluripotent stem cell, comprising contacting a population of cells comprising the progenitor cell with a peptide that binds specifically to the progenitor cell and separating the progenitor cell bound to the peptide from the population of cells thereby enriching for a population of progenitor cells. 
     
     
         2 . The method of  claim 1 , wherein the peptide is chosen from 
       
         
           
                 
                 
                 
               
                     
                   SWTYSYPNQNMD; 
                   (SEQ ID NO: 1) 
                 
                     
                     
                 
                     
                   DWTYSLPGLVEE; 
                   (SEQ ID NO: 2) 
                 
                     
                     
                 
                     
                   NWTWSMPTGNPA; 
                   (SEQ ID NO: 3) 
                 
                     
                     
                 
                     
                   GMTLRVLTN-YTE-; 
                   (SEQ ID NO: 4) 
                 
                     
                     
                 
                     
                   TLHVSENSWTYN; 
                   (SEQ ID NO: 5) 
                 
                     
                     
                 
                     
                   DWLWSFAPNVDT; 
                   (SEQ ID NO: 6) 
                 
                     
                     
                 
                     
                   TLSSQNPYMHKK; 
                   (SEQ ID NO: 7) 
                 
                     
                     
                 
                     
                   IDKQMMTSHKAI; 
                   (SEQ ID NO: 8) 
                 
                     
                     
                 
                     
                   QGMETQKLRMLK; 
                   (SEQ ID NO: 9) 
                 
                     
                     
                 
                     
                   GWYWETPLDMFN; 
                   (SEQ ID NO: 10) 
                 
                     
                     
                 
                     
                   GWVIDYDYYPMR; 
                   (SEQ ID NO: 11) 
                 
                     
                     
                 
                     
                   VTAENYQSFSVS; 
                   (SEQ ID NO: 12) 
                 
                     
                     
                 
                     
                   NNKMDDRMMMSIV; 
                   (SEQ ID NO: 13) 
                 
                     
                     
                 
                     
                   STGTDLHSNARI; 
                   (SEQ ID NO: 14) 
                 
                     
                     
                 
                     
                   YEFDNLLNRTLW; 
                   (SEQ ID NO: 15) 
                 
                     
                     
                 
                     
                   EWTVNERTMWDL. 
                   (SEQ ID NO: 16) 
                 
             
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
               
            
           
         
       
     
     
         3 . The method of  claim 1 , wherein the progenitor cell is a human cell. 
     
     
         4 . The method of  claim 3  wherein the progenitor cell is an endoderm cell. 
     
     
         5 . The method of  claim 3 , wherein the progenitor cell is a mesoderm cell. 
     
     
         6 . The method of  claim 3 , wherein the progenitor cell is a W10 progenitor cell. 
     
     
         7 . The method of  claim 3 , wherein the progenitor cell expresses the markers and neural crest derivatives-expressed 2 (HAND2), HOXA4 and HOXB7. 
     
     
         8 . The method of  claim 1 , wherein the peptide has plexin homology. 
     
     
         9 . A peptide that binds to a progenitor cell chosen from 
       
         
           
                 
                 
                 
               
                     
                   SWTYSYPNQNMD; 
                   (SEQ ID NO: 1) 
                 
                     
                     
                 
                     
                   DWTYSLPGLVEE; 
                   (SEQ ID NO: 2) 
                 
                     
                     
                 
                     
                   NWTWSMPTGNPA; 
                   (SEQ ID NO: 3) 
                 
                     
                     
                 
                     
                   GMTLRVLTN-YTE-; 
                   (SEQ ID NO: 4) 
                 
                     
                     
                 
                     
                   TLHVSENSWTYN; 
                   (SEQ ID NO: 5) 
                 
                     
                     
                 
                     
                   DWLWSFAPNVDT; 
                   (SEQ ID NO: 6) 
                 
                     
                     
                 
                     
                   TLSSQNPYMHKK; 
                   (SEQ ID NO: 7) 
                 
                     
                     
                 
                     
                   IDKQMMTSHKAI; 
                   (SEQ ID NO: 8) 
                 
                     
                     
                 
                     
                   QGMETQKLRMLK; 
                   (SEQ ID NO: 9) 
                 
                     
                     
                 
                     
                   GWYWETPLDMFN; 
                   (SEQ ID NO: 10) 
                 
                     
                     
                 
                     
                   GWVIDYDYYPMR; 
                   (SEQ ID NO: 11) 
                 
                     
                     
                 
                     
                   VTAENYQSFSVS; 
                   (SEQ ID NO: 12) 
                 
                     
                     
                 
                     
                   NNKMDDRMMMSIV; 
                   (SEQ ID NO: 13) 
                 
                     
                     
                 
                     
                   STGTDLHSNARI; 
                   (SEQ ID NO: 14) 
                 
                     
                     
                 
                     
                   YEFDNLLNRTLW; 
                   (SEQ ID NO: 15) 
                 
                     
                   EWTVNERTMWDL. 
                   (SEQ ID NO: 16) 
                 
             
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
               
            
           
         
       
     
     
         10 . The peptide of  claim 9 , wherein the peptide has plexin homology. 
     
     
         11 . A composition comprising a progenitor cell and a peptide specifically bound to the progenitor cell, wherein the progenitor cell is the in vitro progeny of a pluripotent stem cell. 
     
     
         12 . The composition of  claim 11 , wherein the progenitor cell is a human progenitor cell. 
     
     
         13 . The composition of  claim 12 , wherein the progenitor cell is an endoderm progenitor cell. 
     
     
         14 . The composition of  claim 12 , wherein the progenitor cell is a mesoderm progenitor cell. 
     
     
         15 . The composition of  claim 11 , wherein the progenitor cell is the W10 progenitor cell. 
     
     
         16 . The composition of  claim 11 , wherein the progenitor cell expresses the markers neural crest derivatives-expressed 2 (HAND2), HOXA4 and HOXB7. 
     
     
         17 . The composition of  claim 11 , wherein the peptide is chosen from 
       
         
           
                 
                 
                 
               
                     
                   SWTYSYPNQNMD; 
                   (SEQ ID NO: 1) 
                 
                     
                     
                 
                     
                   DWTYSLPGLVEE; 
                   (SEQ ID NO: 2) 
                 
                     
                     
                 
                     
                   NWTWSMPTGNPA; 
                   (SEQ ID NO: 3) 
                 
                     
                     
                 
                     
                   GMTLRVLTN-YTE-; 
                   (SEQ ID NO: 4) 
                 
                     
                     
                 
                     
                   TLHVSENSWTYN; 
                   (SEQ ID NO: 5) 
                 
                     
                     
                 
                     
                   DWLWSFAPNVDT; 
                   (SEQ ID NO: 6) 
                 
                     
                     
                 
                     
                   TLSSQNPYMHKK; 
                   (SEQ ID NO: 7) 
                 
                     
                     
                 
                     
                   IDKQMMTSHKAI; 
                   (SEQ ID NO: 8) 
                 
                     
                     
                 
                     
                   QGMETQKLRMLK; 
                   (SEQ ID NO: 9) 
                 
                     
                     
                 
                     
                   GWYWETPLDMFN; 
                   (SEQ ID NO: 10) 
                 
                     
                     
                 
                     
                   GWVIDYDYYPMR; 
                   (SEQ ID NO: 11) 
                 
                     
                     
                 
                     
                   VTAENYQSFSVS; 
                   (SEQ ID NO: 12) 
                 
                     
                     
                 
                     
                   NNKMDDRMMMSIV; 
                   (SEQ ID NO: 13) 
                 
                     
                     
                 
                     
                   STGTDLHSNARI; 
                   (SEQ ID NO: 14) 
                 
                     
                     
                 
                     
                   YEFDNLLNRTLW; 
                   (SEQ ID NO: 15) 
                 
                     
                     
                 
                     
                   EWTVNERTMWDL. 
                   (SEQ ID NO: 16) 
                 
             
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
                
               
            
           
         
       
     
     
         18 . The composition of  claim 11 , wherein the peptide has plexin homology.

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