Prodrug Comprising a Drug Linker Conjugate

Abstract

The present invention relates to a prodrug or a pharmaceutically acceptable salt thereof comprising a drug linker conjugate D-L, wherein -D is an amine containing biologically active moiety; and -L is a non-biologically active linker moiety -L 1 represented by formula (I): wherein the dashed line indicates the attachment to the amine of the biologically active moiety and wherein R 1 , R 1a , R 2 , R 2a , R 3 , R 3a , X, X 1 , X 2 , X 3 have the meaning as indicated in the description and the claims and wherein L 1 is substituted with one to four groups L 2 -Z and optionally further substituted, provided that the hydrogen marked with the asterisk in formula (I) is not replaced by a substituent; wherein L 2 is a single chemical bond or a spacer, and Z is a carrier group. The invention also relates to A-L, wherein A is a leaving group, pharmaceutical composition comprising said prodrugs and their use as medicaments.

1 . A prodrug or a pharmaceutically acceptable salt thereof comprising:
 a cleavable drug-linker conjugate D-L, which is configured so that the bond between the moiety D and the moiety L is cleaved after the drug-linker conjugate D-L is administered so as to release a drug D-H;   wherein:
 -D is a nitrogen containing biologically active moiety selected from the group consisting of:
 antibody fragments, single chain antigen binding proteins, catalytic antibodies, and fusion proteins; 
 
 -L is a non-biologically active linker moiety -L 1 ; and 
 -L 1  comprises an amine-containing nucleophile, and is represented by formula (I): 
   
       
         
           
           
               
               
           
         
         
           
             wherein:
 the dashed line indicates the attachment to the nitrogen of the biologically active moiety by forming an amide bond; 
 X is C(R 4 R 4a ), N(R 4 ), O, C(R 4 R 4a )—C(R 5 R 5a ), C(R 5 R 5a )—C(R 4 R 4a ), C(R 4 R 4a )—N(R 6 ), N(R 4 R 4a )—C(R 4 R 4a ), C(R 4 R 4a )—O, or O—C(R 4 R 4a ); 
 X 1  is C, or S(O); 
 X 2  is C(R 7 R 7a ), or C(R 7 R 7a )—C(R 8 R 8a ); 
 X 3  is O, S, or N—CN; 
 R 1 , R 1a , R 2 , R 2a , R 3 , R 3a , R 4 , R 4a , R 5 , R 5a , R 6 , R 7 , R 7a , R 8 , and R 8a  are independently selected from the group consisting of H, and C 1-4  alkyl; 
 optionally, one or more of the pairs R 1a /R 4a , R 1a /R 5a , R 4a /R 5a , and R 7a /R 8a  form a chemical bond; 
 optionally, one or more of the pairs R 1 /R 1a , R 2 /R 2a , R 4 /R 4a , R 5 /R 5a , R 7 /R 7a , and R 8 /R 8a  are joined together with the atom to which they are attached to form a C 3-7  cycloalkyl, or 4 to 7 membered heterocyclyl; 
 optionally, one or more of the pairs R 1 /R 4 , R 1 /R 5 , R 1 /R 6 , R 4 /R 5 , R 4 /R 6 , R 7 /R 8 , and R 2 /R 3  are joined together with the atoms to which they are attached to form a ring A; 
 optionally, R 3 /R 3a  are joined together with the nitrogen atom to which they are attached to form a 4 to 7 membered heterocycle; 
 
             A is selected from the group consisting of:
 phenyl, naphthyl, indenyl, indanyl, tetralinyl, C 3-10  cycloalkyl, 4 to 7 membered heterocyclyl, and 9 to 11 membered heterobicyclyl; and 
 —N(R 3 R 3a ) is the amine-containing nucleophile; 
 
           
           wherein L 1  is substituted with one to four groups L 2 -Z and optionally further substituted, provided that the hydrogen marked with the asterisk in formula (I) is not replaced by a substituent, and wherein one or more further optional substituents are independently selected from the group consisting of:
 halogen, CN, COOR 9 , OR 9 , C(O)R 9 , C(O)N(R 9 R 9a ), S(O) 2 N(R 9 R 9a ), S(O)N(R 9 R 9a ), S(O) 2 R 9 , S(O)R 9 , N(R 9 )S(O) 2 N(R 9a R 9b ), SR 9 , N(R 9 R 9a ), NO 2 , OC(O)R 9 , N(R 9 )C(O)R 9a , N(R 9 )S(O) 2 R 9a , N(R 9 )S(O)R 9a , N(R 9 )C(O)OR 9a , N(R 9 )C(O)N(R 9a R 9b ), OC(O)N(R 9 R 9a ), T, C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl; 
 wherein T, C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl are optionally substituted with one or more R 10 , which are the same or different; 
 wherein C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl are optionally interrupted by one or more groups selected from the group consisting of:
 T, —C(O)O—, —O—, —C(O)—, —C(O)N(R 11 )—, —S(O) 2 N(R 11 )—, —S(O)N(R 11 )—, —S(O) 2 —, —S(O)—, —N(R 11 )S(O) 2 N(R 11a )—, —S—, —N(R 11 )—, —OC(O)R 11 , —N(R 11 )C(O)—, —N(R 11 )S(O) 2 —, —N(R 11 )S(O)—, —N(R 11 )C(O)O—, —N(R 11 )C(O)N(R 11a )—, and —OC(O)N(R 11 R 11a ); 
 
 wherein R 9 , R 9a , R 9b  are independently selected from the group consisting of:
 H, T, C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl; 
 wherein T, C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl are optionally substituted with one or more R 10 , which are the same or different; and 
 wherein C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl are optionally interrupted by one or more groups selected from the group consisting of: 
  T, —C(O)O—, —O—, —C(O)—, —C(O)N(R 11 )—, —S(O) 2 N(R 11 )—, —S(O)N(R 11 )—, —S(O) 2 —, —S(O)—, —N(R 11 )S(O) 2 N(R 11a )—, —S—, —N(R 11 )—, —OC(O)R 11 , —N(R 11 )C(O)—, —N(R 11 )S(O) 2 —, —N(R 11 )S(O)—, —N(R 11 )C(O)O—, —N(R 11 )C(O)N(R 11a )—, and —OC(O)N(R 11 R 11a ); 
 
 wherein T is selected from the group consisting of:
 phenyl, naphthyl, indenyl, indanyl, tetralinyl, C 3-10  cycloalkyl, 4 to 7 membered heterocyclyl, and 9 to 11 membered heterobicyclyl; 
 
 wherein T is optionally substituted with one or more R 10 , which are the same or different; 
 wherein R 10  is:
 halogen, CN, oxo (═O), COOR 12 , OR 12 , C(O)R 12 , C(O)N(R 12 R 12a ), S(O) 2 N(R 12 R 12a ), S(O)N(R 12 R 12a ), S(O) 2 R 12 , S(O)R 12 , N(R 12 )S(O) 2 N(R 12a R 12b ), SR 12 , N(R 12 R 12a ), NO 2 , OC(O)R 12 , N(R 12 )C(O)R 12a , N(R 12 )S(O) 2 R 12a , N(R 12 )S(O)R 12a , N(R 12 )C(O)OR 12a , N(R 12 )C(O)N(R 12a R 12b ), OC(O)N(R 12 R 12a ), or C 1-6  alkyl; 
 wherein C 1-6  alkyl is optionally substituted with one or more halogen, which are the same or different; and 
 
 wherein R 11 , R 11a , R 12 , R 12a , and R 12b  are independently selected from the group consisting of:
 H and C 1-6  alkyl; 
 wherein C 1-6  alkyl is optionally substituted with one or more halogen, which are the same or different; 
 
 
           wherein L 2  is a single chemical bond or a spacer, and 
           wherein Z is a carrier group. 
         
       
     
     
         2 . The prodrug of  claim 1 ;
 wherein X 3  is O.   
     
     
         3 . The prodrug of  claim 1 ;
 wherein:
 X is N(R 4 ); 
 X 1  is C; and 
 X 3  is O. 
   
     
     
         4 . The prodrug of  claim 1 ;
 wherein X 2  is C(R 7 R 7a ).   
     
     
         5 . The prodrug of  claim 1 ;
 wherein L 1  is selected from the group consisting of:   
       
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         wherein:
 R is H, or C 1-4  alkyl; and 
 Y is NH, O, or S. 
 
       
     
     
         6 . The prodrug of  claim 1 ;
 wherein L 1  is selected from the group consisting of:   
       
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         
           
           
               
               
           
         
         wherein R is H, or C 1-4  alkyl. 
       
     
     
         7 . The prodrug of  claim 1 ;
 wherein:
 L 2  is a single chemical bond; or 
 L 2 -Z is selected from the group consisting of:
 COOR 9 , OR 9 , C(O)R 9 , C(O)N(R 9 R 9a ), S(O) 2 N(R 9 R 9a ), S(O)N(R 9 R 9a ), S(O) 2 R 9 , S(O)R 9 , N(R 9 )S(O) 2 N(R 9a R 9b ), SR 9 , N(R 9 R 9a ), OC(O)R 9 , N(R 9 )C(O)R 9a , N(R 9 )S(O) 2 R 9a , N(R 9 )S(O)R 9a , N(R 9a )C(O)OR 9a , N(R 9 )C(O)N(R 9a R 9b ), OC(O)N(R 9 R 9a ), T, C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl; 
 wherein T, C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl are optionally substituted with one or more R 10 , which are the same or different; and 
 wherein C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl are optionally interrupted by one or more groups selected from the group consisting of
 -T-, —C(O)O—, —O—, —C(O)—, —C(O)N(R 11 )—, —S(O) 2 N(R 11 )—, —S(O)N(R 11 )—, —S(O) 2 —, —S(O)—, —N(R 11 )S(O) 2 N(R 11 )—, —S—, —N(R 11 )—, —OC(O)R 11 , —N(R 11 )C(O)—, —N(R 11 )S(O) 2 —, —N(R 11 )S(O)—, —N(R 11 )C(O)O—, —N(R 11 )C(O)N(R 11a )—, and —OC(O)N(R 11 R 11a ); and 
 
 
   wherein:
 R 9 , R 9a , and R 9b  are independently selected from the group consisting of:
 H, Z, T, C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl wherein T, C alkyl, C, alkenyl, and C alkynyl are optionally substituted with one or more R 10 , which are the same or different; and 
 wherein C 1-50  alkyl, C 2-50  alkenyl, and C 2-50  alkynyl are optionally interrupted by one or more groups selected from the group consisting of:
 -T, —C(O)O—, —O—, —C(O)—, —C(O)N(R 11 )—, —S(O) 2 N(R 11 )—, —S(O)N(R 11 )—, —S(O) 2 —, —S(O)—, —N(R 11 )S(O) 2 N(R 11a )—, —S—, —N(R 11 )—, —OC(O)R 11 , —N(R 11 )C(O)—, —N(R 11 )S(O) 2 —, —N(R 11 )S(O)—, —N(R 11 )C(O)O—, —N(R 11 )C(O)N(R 11a )—, and —OC(O)N(R 11 R 11a ); 
 
 
 T is selected from the group consisting of:
 phenyl, naphthyl, indenyl, indanyl, tetralinyl, C 3-10  cycloalkyl, 4 to 7 membered heterocyclyl, and 9 to 11 membered heterobicyclyl; 
 wherein T is optionally substituted with one or more R 10 , which are the same or different; 
 
 R 10  is selected from the group consisting of:
 Z, halogen, CN, oxo (═O), COOR 12 , OR 12 , C(O)R 12 , C(O)N(R 12 R 12a ), S(O) 2 N(R 12 R 12a ), S(O)N(R 12 R 12a ), S(O) 2 R 12 , S(O)R 12 , N(R 12 )S(O) 2 N(R 12a R 12b ), SR 12 , N(R 12 R 12a ), NO 2 ; OC(O)R 12 , N(R 12 )C(O)R 12a , N(R 12 )S(O) 2 R 12a , N(R 12 )S(O)R 12a , N(R 12 )C(O)OR 12a , N(R 12 )C(O)N(R 12a R 12b ), OC(O)N(R 12 R 12a ), and C 1-6  alkyl; 
 wherein C 1-6  alkyl is optionally substituted with one or more halogen, which are the same or different; and 
 
 R 11 , R 11a , R 12 , R 12a , and R 12b  are independently selected from the group consisting of:
 H, Z, or C 1-6  alkyl; 
 wherein C 1-6  alkyl is optionally substituted with one or more halogen, which are the same or different; 
 
 provided that one of R 9 , R 9a , R 9b , R 10 , R 11 , R 11a , R 12 , R 12a , and R 12b  is Z. 
   
     
     
         8 . The prodrug of  claim 1 ;
 wherein L 2  is a C 1-20  alkyl chain, which is:
 optionally interrupted by one or more groups independently selected from —O— and C(O)N(R 3aa ); and 
 optionally substituted with one or more groups independently selected from OH and C(O)N(R 3aa R 3aaa ); and 
   wherein R 3aa  and R 3aaa  are independently selected from the group consisting of H, and C 1-4  alkyl.   
     
     
         9 . The prodrug of  claim 1 ;
 wherein L 2  has a molecular weight in the range of from 14 g/mol to 750 g/mol.   
     
     
         10 . The prodrug of  claim 1 ;
 wherein L 2  is attached to Z via a terminal group selected from the group consisting of:   
       
         
           
           
               
               
           
         
       
     
     
         11 . The prodrug of  claim 1 ;
 wherein L is represented by formula (Ia):   
       
         
           
           
               
               
           
         
         
           wherein R 3aa  and R 3aaa :
 are independently selected from the group consisting of H and C 1-4  alkyl; or 
 are joined together with the nitrogen atom to which they are attached to form a 4 to 7 membered heterocycle. 
 
         
       
     
     
         12 . The prodrug of  claim 1 ;
 wherein L is represented by formula (Ib):   
       
         
           
           
               
               
           
         
         wherein R 3aa  is H or C 1-4  alkyl. 
       
     
     
         13 . The prodrug of  claim 1 ;
 wherein R 1  in formula (I) is L 2 -Z.   
     
     
         14 . The prodrug of  claim 1 ;
 wherein R 3  in formula (I) is L 2 -Z.   
     
     
         15 . The prodrug of  claim 1 ;
 wherein R 3  and R 3a  in formula (I) are joined together with the nitrogen atom to which they are attached to form a 4 to 7 membered heterocycle which is substituted with L 2 -Z.   
     
     
         16 . The prodrug of  claim 1 ;
 wherein Z is a polymer of at least 500 Da or a C 8-18  alkyl group.   
     
     
         17 . The prodrug of  claim 1 ;
 wherein Z is selected from the group of optionally crosslinked polymers consisting of:
 poly(propylene glycol), poly(ethylene glycol), dextran, chitosan, hyaluronic acid, alginate, xylan, mannan, carrageenan, agarose, cellulose, starch, hydroxyalkyl starch (HAS), poly(vinyl alcohols), poly(oxazolines), poly(anhydrides), poly(ortho esters), poly(carbonates), poly(urethanes), poly(acrylic acids), poly(acrylamides), poly(acrylates), poly(methacrylates), poly(organophosphazenes), polyoxazoline, poly(siloxanes), poly(amides), poly(vinylpyrrolidone), poly(cyanoacrylates), poly(esters), poly(iminocarbonates), poly(amino acids), collagen, gelatin, hydrogel, a blood plasma protein, and copolymers thereof. 
   
     
     
         18 . The prodrug of  claim 1 ;
 wherein Z is a linear or branched poly(ethylene glycol) with a molecular weight from 2,000 Da to 150,000 Da.   
     
     
         19 . A pharmaceutical composition comprising:
 a prodrug of  claim 1  or a pharmaceutical salt thereof; and   a pharmaceutically acceptable excipient.   
     
     
         20 . A method comprising:
 administering the prodrug of  claim 1 .   
     
     
         21 . A method comprising
 administering the pharmaceutical composition of  claim 19 .