Scalable fermentation process

Abstract

This invention provides a robust fermentation process for the expression of a capsid protein of a bacteriophage which is forming a VLP by self-assembly, wherein the process is scalable to a commercial production scale and wherein the expression rate of the capsid protein is controlled to obtain improved yield of soluble capsid protein. This is achieved by combining the advantages of fed-batch culture and of lactose induced expression systems with specific process parameters providing improved repression of the promoter during the growth phase and high plasmid retention throughout the process.

1 . A process for expression of a recombinant capsid protein of a RNA bacteriophage being capable of forming a virus-like particle (VLP) by self-assembly, wherein said RNA bacteriophage is RNA bacteriophage Qβ, and wherein said recombinant capsid protein comprises SEQ ID NO:5, said process comprising:
 a.) introducing an expression plasmid into a bacterial host, wherein said expression plasmid comprises an expression construct, wherein said expression construct comprises (i) a first nucleotide sequence encoding said recombinant capsid protein, or mutant or fragment thereof, and (ii) a promoter being inducible by lactose; 
 b.) initiating a growth phase by cultivating said bacterial host in a medium comprising a major carbon source; wherein said cultivating initiates a batch phase during said growth phase, wherein said cultivating is performed in batch culture and under conditions under which said promoter is repressed by lacI, wherein said lacI is overexpressed by said bacterial host, and wherein no feeding of said batch culture is performed during said cultivating; 
 c.) ending said batch phase and initiating a feed phase during said growth phase by feeding said batch culture with said major carbon source; wherein said feeding of said batch culture is performed with a flow rate, wherein said flow rate increases with an exponential coefficient μ, and 
 d.) ending said growth phase and initiating a production phase by inducing said promoter with an inducer, wherein said feeding of said batch culture with said major carbon source is continued; and 
 
       wherein during said steps (b.), (c.) and (d.) no removal of medium, except for analytical purposes, takes place leading to an increased density of said bacterial host in said medium. 
     
     
         2 - 5 . (canceled) 
     
     
         6 . The process of  claim 1 , wherein said expression construct comprises a first stop codon and a second stop codon, wherein said first stop codon is located directly 3′ of said first nucleotide sequence and wherein said second stop codon is located directly 3′ of said first stop codon, and wherein at least one of said first or second stop codon is TAA. 
     
     
         7 . The process of  claim 1 , wherein said expression construct further comprises a second nucleotide sequence, wherein said first nucleotide sequence encodes Qβ coat protein (CP), and wherein said second nucleotide sequence encodes Qβ A1 protein and wherein said first and said second nucleotide sequence are separated by exactly one sequence stretch comprising at least one TAA stop codon. 
     
     
         8 . The process of  claim 1 , wherein said expression construct comprises SEQ ID NO:6. 
     
     
         9 . The process of  claim 1 , wherein said expression plasmid comprises SEQ ID NO:1. 
     
     
         10 . (canceled) 
     
     
         11 . The process of  claim 1 , wherein said promoter is selected from the group consisting of
 a.) tac promoter;   b.) trc promoter;   c.) tic promoter;   d.) lac promoter;   e.) lacUV5 promoter;   f.) P syn  promoter;   g.) lpp a  promoter;   h.) lpp-lac promoter;   i.) T7-lac promoter;   j.) T3-lac promoter;   k.) T5-lac promoter; and   l.) a promoter having at least 50% sequence homology to SEQ ID NO:2.   
     
     
         12 . The process of  claim 1 , wherein said promoter comprises SEQ ID NO:2. 
     
     
         13 . The process of  claim 1 , wherein said major carbon source is glycerol. 
     
     
         14 . The process of  claim 1 , wherein said exponential coefficient μ is below μ max . 
     
     
         15 . The process of  claim 1 , wherein said inducing of said promoter is performed by co-feeding said batch culture with said inducer and said major carbon source at a constant flow rate. 
     
     
         16 . The process of  claim 1 , wherein said inducing of said promoter is performed by co-feeding said batch culture with said inducer and said major carbon source at an increasing flow rate. 
     
     
         17 . The process of  claim 15 , wherein said inducer is lactose and wherein said lactose and said major carbon source are co-fed to said batch culture in a ratio of about 2:1 to 1:4 (w/w). 
     
     
         18 . The process of  claim 1 , wherein said inducer is IPTG and wherein the concentration of said IPTG in said medium is 0.001 to 5 mM. 
     
     
         19 . (canceled) 
     
     
         20 . The process of  claim 1 , wherein said lacI is overexpressed by said bacterial host, wherein said overexpression is caused by lacI q  or lacQ1. 
     
     
         21 . (canceled) 
     
     
         22 . (canceled) 
     
     
         23 . The process of  claim 1 , wherein said inducer is lactose and wherein said bacterial host comprises β-galactosidase activity. 
     
     
         24 . The process of  claim 1 , wherein said cultivating and said feeding of said batch culture and said inducing of said promoter is performed at a temperature which is below the optimal growth temperature of said bacterial host. 
     
     
         25 . The process of  claim 1  wherein:
 a.) said major carbon source is glycerol; 
 b.) said inducer is lactose; 
 c.) and said lactose and said major carbon source are co-fed to said batch culture in a ratio of 2:1 to 1:4 (w/w); 
 d.) said bacterial host is  E. coli  RB791; and 
 e.) said cultivating and feeding of said batch culture and said inducing of said promoter is performed at a temperature of about 30° C. 
 
     
     
         26 . (canceled) 
     
     
         27 . The process of  claim 1 , wherein throughout steps b.) to d.) of said process oxygen is supplied to said bacterial host, wherein said oxygen supply is effected such that the partial pressure of oxygen in the medium (pO 2 ) is at least about 40%. 
     
     
         28 . The process of  claim 16 , wherein said inducer is lactose and wherein said lactose and said major carbon source are co-fed to said batch culture in a ratio of about 2:1 to 1:4 (w/w). 
     
     
         29 . The process of  claim 1 , wherein said inducer is lactose. 
     
     
         30 . The process of  claim 20 , wherein said overexpression is caused by lacI q . 
     
     
         31 . The process of  claim 29 , wherein said lactose and said major carbon source are co-fed to said batch culture in a ratio of 1:1 to 1:3 (w/w). 
     
     
         32 . The process of  claim 29 , wherein said lactose and said major carbon source are co-fed to said batch culture in a ratio of 1:3 (w/w).