High speed scanning system with acceleration tracking

Abstract

Disclosed herein is a high throughput optical scanning device and methods of use. The optical scanning device and methods of use provided herein can allow high throughput scanning of a continuously moving object with a high resolution despite fluctuations in stage velocity. This can aid in high throughput scanning of a substrate, such as a biological chip comprising fluorophores. Also provided herein are improved optical relay systems and scanning optics.

1 .- 67 . (canceled) 
     
     
         68 . An optical scanning system for imaging a moving substrate, comprising:
 a. a stage configured to:
 i. undergo movement along an axis, and 
 ii. support a substrate comprising a plurality of fields during said movement along said axis; 
   b. a camera in optical communication, through an optical path, with a field of said plurality of fields, when said substrate is supported by said stage, and wherein said camera is configured to capture an image of said substrate comprising said field;   c. a velocity tracking mirror and an acceleration tracking mirror mounted along said optical path, wherein said velocity tracking mirror and said acceleration tracking mirror are configured to maintain said optical path to stabilize said image of said substrate during said movement of said substrate.   
     
     
         69 . The system of  claim 68 , further comprising a first electrical motor, and wherein a movement of said velocity tracking mirror is actuated by said first electrical motor. 
     
     
         70 . The system of  claim 69 , wherein said first electrical motor is a galvanometer. 
     
     
         71 . The system of  claim 68 , further comprising a second electrical motor, wherein a movement of said acceleration tracking mirror is actuated by said second electrical motor. 
     
     
         72 . The system of  claim 71 , wherein said second electrical motor is a piezoelectric actuator. 
     
     
         73 . The system of  claim 68 , wherein said velocity tracking mirror and said acceleration tracking mirror are adjacent. 
     
     
         74 . The system of  claim 68 , further comprising an objective lens, wherein said objective lens is configured to move along said optical path and wherein a movement of said objective lens is a function of a movement of said field out of a focal plane of said objective lens. 
     
     
         75 . The system of  claim 74 , further comprising a third electrical motor and wherein a movement of said objective lens is actuated by said third electrical motor. 
     
     
         76 . The system of  claim 68 , wherein a movement of said velocity tracking mirror is a function of a velocity measurement of said movement of said stage along said axis. 
     
     
         77 . The system of  claim 76 , wherein said movement of said acceleration tracking mirror is a function of a change in velocity measurement of said movement of said stage along said axis. 
     
     
         78 . The system of  claim 77 , wherein said function of said velocity measurement and said function of said change in velocity measurement are generated by a linear displacement sensor, wherein said linear displacement sensor determines a positional measurement of said stage. 
     
     
         79 . The system of  claim 78 , wherein said linear displacement sensor is a linear encoder. 
     
     
         80 . The system of  claim 68 , wherein said optical path comprises a filter configured to reduce a transmission of excitation light to said camera. 
     
     
         81 . The system of  claim 80 , wherein a light source configured to generate said optical path is displaced adjacent to said stage and is not adjacent to said camera. 
     
     
         82 . The system of  claim 68 , further comprising an additional pair of mirrors comprising a second velocity tracking mirror and a second acceleration tracking mirror, wherein said additional pair of mirrors is mounted along said optical path and wherein said additional pair of mirrors is configured to motion along an additional axis. 
     
     
         83 . A method of imaging a moving substrate, wherein said substrate comprises one or more fields, the method comprising:
 a. disposing said substrate on a stage;   b. configuring a camera to be in optical communication with said one or more fields of said substrate by an optical path;   c. actuating a movement of said stage and configuring a velocity tracking mirror and an acceleration tracking mirror to maintain said optical path to stabilize an image of said substrate during a movement of said stage; and   d. concurrent with said movement, imaging said field passing through an objective lens using said camera.   
     
     
         84 . The method of  claim 83 , wherein (d) further comprises actuating a movement of said objective lens along said axis and wherein said movement of said objective lens is a function of a movement of said one or more fields out of a focal plane of said objective lens. 
     
     
         85 . The method of  claim 83 , wherein (c) comprises actuating a movement of said velocity tracking mirror. 
     
     
         86 . The method of  claim 85 , wherein said movement of said velocity tracking mirror is a function of an anticipated velocity of said stage. 
     
     
         87 . The method of  claim 85 , wherein said movement of said velocity tracking mirror is a function of a velocity measurement of said movement of said stage along said axis. 
     
     
         88 . The method of  claim 85 , wherein (c) comprises actuating a movement of said acceleration tracking mirror. 
     
     
         89 . The method of  claim 88 , wherein a movement of said acceleration tracking mirror is a function of a change in velocity measurement of said movement of said stage along said axis. 
     
     
         90 . The method of  claim 89 , wherein (c) comprises configuring a linear displacement sensor to generate said function of said velocity measurement and said function of said change in velocity measurement of said stage. 
     
     
         91 . The method of  claim 83 , wherein (b) further comprises displacing a light source configured to generate said optical path is displaced adjacent to said stage and is not adjacent to said camera. 
     
     
         92 . The method of  claim 83 , wherein (b) further comprises displacing a filter along said optical path. 
     
     
         93 . The method of  claim 83 , wherein (c) further comprises actuating a movement of an additional pair of mirrors, said additional pair of mirrors comprising a second velocity tracking mirror and a second acceleration tracking mirror, wherein said additional pair of mirrors is mounted along said optical path and wherein said additional pair of mirrors is configured to motion along an additional axis.