Anti-cd3 antibodies, anti-cd123 antibodies and bispecific antibodies specifically binding to cd3 and/or cd123
Abstract
The present invention concerns antibody-like binding protein specifically binding to CD3 and binding specifically to at least one further antigen, for example CD123. The present invention also concerns antibody-like binding protein specifically binding to CD123 and binding specifically to at least one further antigen. The invention further concerns anti-CD3 antibodies and anti-CD123 antibodies. The invention also relates to pharmaceutical compositions comprising the antibody-like binding protein, anti-CD3 antibodies or anti-CD123 antibodies of the invention, and their use to treat cancer. The invention further relates to isolated nucleic acids, vectors and host cells comprising a sequence encoding said antibody-like binding protein, anti-CD3 or anti-CD123 antibody and the use of said anti-CD123 antibody as a diagnostic tool.
Claims
exact text as granted — not AI-modified1 : A method of treating a disease or disorder in a subject in need thereof, comprising:
administering to the subject a therapeutically effective amount of an antibody-like binding protein that specifically binds to CD3ε and CD123 comprising two polypeptide chains that form two antigen-binding sites, wherein the first polypeptide chain comprises a structure represented by the formula [I]:
V D1 -L 1 -V D2 -L 2 -C L [I]
and the second polypeptide chain comprises a structure represented by the formula [II]:
V D3 -L 3 -V D4 -L 4 -C H1 [II]
wherein:
V D1 is a light chain variable domain of a first immuoglobulin;
V D2 is a light chain variable domain of a second immunoglobulin;
V D3 is a heavy chain variable domain of the second immunoglobulin;
V D4 is a heavy chain variable domain of the first immunoglobulin:
C L is a light chain constant domain of an immunoglobulin;
C H1 is a C H1 heavy chain constant domain of an immunoglobulin; and
L 1 , L 2 , L 3 , and L 4 are amino acid linkers;
wherein the first polypeptide chain and the second polypeptide chain form a cross-over light chain-heavy chain pair; and
wherein V D1 comprises a CDR1-L comprising an amino acid sequence as set forth in SEQ ID NO: 378, a CDR2-L comprising an amino acid sequence of WAS, and a CDR3-L comprising an amino acid sequence as set forth in SEQ ID NO: 379;
V D2 comprises a CDR4-L comprising an amino acid sequence as set forth in SEQ ID NO: 142, a CDR5-L comprising an amino acid sequence of KVS, and a CDR6-L comprising an amino acid sequence as set forth in SEQ ID NO: 11:
V D3 comprises a CDR1-H comprising an amino acid sequence as set forth in SEQ ID NO: 6, a CDR2-H comprising an amino acid sequence as set forth in SEQ ID NO: 7, and a CDR3-H comprising an amino acid sequence as set forth in SEQ ID NO: 8; and
V D4 comprises a CDR4-H comprising an amino acid sequence as set forth in SEQ ID NO: 381, a CDR5-H comprising an amino acid sequence as set forth in SEQ ID NO: 384, and a CDR6-H comprising an amino acid sequence as set forth in SEQ ID NO: 382.
2 : The method of claim 1 , wherein:
L 1 comprises an amino acid sequence as set forth in SEQ ID NO: 389: L 2 comprises an amino acid sequence as set forth in SEQ ID NO: 389; and L 3 and L 4 are 0 amino acids in length.
3 : The method of claim 1 , wherein:
V D1 comprises an amino acid sequence as set forth in SEQ ID NO: 385: V D2 comprises an amino acid sequence as set forth in SEQ ID NO: 141; V D3 comprises an amino acid sequence as set forth in SEQ ID NO: 138; V D4 comprises an amino acid sequence as set forth in SEQ ID NO: 383; C L comprises an amino acid sequence as set forth in SEQ ID NO: 310; and C H1 comprises an amino acid sequence as set forth in SEQ ID NO: 313.
4 : The method of claim 1 , wherein:
(a) the first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 388, or
an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 388, which comprises a CDR1-L comprising an amino acid sequence as set forth in SEQ ID NO: 378, a CDR2-L comprising an amino acid sequence WAS, a CDR3-L comprising an amino acid sequence as set forth in SEQ ID NO: 379, a CDR4-L comprising an amino acid sequence as set forth in SEQ ID NO: 142, a CDR5-L comprising an amino acid sequence of KVS, and a CDR6-L comprising an amino acid sequence as set forth in SEQ ID NO: 11; and
(b) the second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 390, or
an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 390, which comprises a CDR1-H comprising an amino acid sequence as set forth in SEQ ID NO: 6, a CDR2-H comprising an amino acid sequence as set forth in SEQ ID NO: 7, a CDR3-H comprising an amino acid sequence as set forth in SEQ ID NO: 8, a CDR4-H comprising an amino acid sequence as set forth in SEQ ID NO: 381, a CDR5-H comprising an amino acid sequence as set forth in SEQ ID NO: 384, and a CDR6-H comprising an amino acid sequence as set forth in SEQ ID NO: 382.
5 : The method of claim 1 , wherein the second polypeptide chain further comprises a Fc domain (“Fc”).
6 : The method of claim 1 , wherein the first polypeptide chain further comprises a Fc domain (“Fc”).
7 : A method of treating a disease or disorder in a subject in need thereof, comprising:
administering to the subject a therapeutically effective amount of an antibody-like binding protein that specifically binds to CD3ε and CD123 comprising two polypeptide chains that form two antigen-binding sites, wherein the first polypeptide chain comprises a structure represented by the formula [IV]:
V D1 -L 1 -V D2 -L 2 -C L -L 5 -Fc 2 [IV]
and the second polypeptide chain comprises a structure represented by the formula [III]:
V D3 -L 3 -V D4 -L 4 -C H1 -Fc [III]
wherein:
V D1 is a light chain variable domain of a first immunoglobulin;
V D2 is a light chain variable domain of a second immuoglobulin;
V D3 is a heavy chain variable domain of the second immunoglobulin;
V D4 is a heavy chain variable domain of the first immunoglobulin;
C L is a light chain constant domain of an immunoglobulin;
C H1 is a C H1 heavy chain constant domain of an immunoglobulin;
Fc is the immunoglobulin hinge region and CH 2 , CH 3 immunoglobulin heavy chain constant domains of a first immunoglobulin;
Fc 2 is the immunoglobulin hinge region and CH 2 , CH 3 immunoglobulin heavy chain constant domains of a second immunoglobulin; and
L 1 , L 2 , L 3 , L 4 , and L 5 are amino acid linkers;
wherein the first polypeptide chain of formula [IV] and the second polypeptide chain of formula [III] form a cross-over light chain-heavy chain pair; and
wherein V D1 comprises a CDR1-L comprising an amino acid sequence as set forth in SEQ ID NO: 378, a CDR2-L comprising an amino acid sequence of WAS, and a CDR3-L comprising an amino acid sequence as set forth in SEQ ID NO: 379;
V D2 comprises a CDR4-L comprising an amino acid sequence as set forth in SEQ ID NO: 142, a CDR5-L comprising an amino acid sequence of KVS, and a CDR6-L comprising an amino acid sequence as set forth in SEQ ID NO: 11;
V D3 comprises a CDR1-H comprising an amino acid sequence as set forth in SEQ ID NO: 6, a CDR2-H comprising an amino acid sequence as set forth in SEQ ID NO: 7, and a CDR3-H comprising an amino acid sequence as set forth in SEQ ID NO: 8; and
V D4 comprises a CDR4-H comprising an amino acid sequence as set forth in SEQ ID NO: 381, a CDR5-H comprising an amino acid sequence as set forth in SEQ ID NO: 384, and a CDR6-H comprising an amino acid sequence as set forth in SEQ ID NO: 382.
8 : The method of claim 7 , wherein:
L 1 comprises an amino acid sequence as set forth in SEQ ID NO: 389: L 2 comprises an amino acid sequence as set forth in SEQ ID NO: 389; and L 3 , L 4 , and L 5 are 0 amino acids in length.
9 : The method of claim 7 , wherein:
Fc comprises an amino acid sequence as set forth in SEQ ID NO: 394; and Fc 2 comprises an amino acid sequence as set forth in SEQ ID NO: 392.
10 : The method of claim 7 , wherein:
V D1 comprises an amino acid sequence as set forth in SEQ ID NO: 385: V D2 comprises an amino acid sequence as set forth in SEQ ID NO: 141; V D3 comprises an amino acid sequence as set forth in SEQ ID NO: 138; V D4 comprises an amino acid sequence as set forth in SEQ ID NO: 383; C L comprises an amino acid sequence as set forth in SEQ ID NO: 310; and C H1 comprises an amino acid sequence as set forth in SEQ ID NO: 313.
11 : The method of claim 7 , wherein:
(a) the first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 391, or an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 391, which comprises a CDR1-L comprising an amino acid sequence as set forth in SEQ ID NO: 378, a CDR2-L comprising an amino acid sequence WAS, a CDR3-L comprising an amino acid sequence as set forth in SEQ ID NO: 379, a CDR4-L comprising an amino acid sequence as set forth in SEQ ID NO: 142, a CDR5-L comprising an amino acid sequence of KVS, and a CDR6-L comprising an amino acid sequence as set forth in SEQ ID NO: 11; and (b) the second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 393, or an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 393, which comprises a CDR1-H comprising an amino acid sequence as set forth in SEQ ID NO: 6, a CDR2-H comprising an amino acid sequence as set forth in SEQ ID NO: 7, a CDR3-H comprising an amino acid sequence as set forth in SEQ ID NO: 8, a CDR4-H comprising an amino acid sequence as set forth in SEQ ID NO: 381, a CDR5-H comprising an amino acid sequence as set forth in SEQ ID NO: 384, and a CDR6-H comprising an amino acid sequence as set forth in SEQ ID NO: 382.
12 : A method of treating a disease or disorder in a subject in need thereof, comprising:
administering to the subject a therapeutically effective amount of an antibody-like binding protein that binds specifically to CD3ε and CD123 comprising two polypeptide chains that form two antigen-binding sites, wherein a first polypeptide has a structure represented by the formula [I]:
V D1 -L 1 -V D2 -L 2 -C L [I]
and a second polypeptide has a structure represented by the formula [II]:
V D3 -L 3 -V D4 -L 4 -C H1 [II]
wherein:
V D1 is a light chain variable domain of a first immunoglobulin;
V D2 is a light chain variable domain of a second immuoglobulin;
V D3 is a heavy chain variable domain of the second immunoglobulin;
V D4 is a heavy chain variable domain of the first immunoglobulin;
C L is a light chain constant domain of an immunoglobulin;
C H1 is a C H1 heavy chain constant domain of an immunoglobulin;
L 1 , L 2 , L 3 , and L 4 are amino acid linkers; and
wherein the first polypeptide and the second polypeptide form a cross-over light chain-heavy chain pair; and
wherein V D1 consists of the amino acid sequence as set forth in SEQ ID NO: 385, or an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 385, which comprises a CDR1-L of sequence SEQ ID NO: 378, a CDR2-L of sequence WAS, and a CDR3-L of sequence SEQ ID NO: 379:
V D2 consists of the amino acid sequence as set forth in SEQ ID NO: 141, or an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 141, which comprises a CDR1-L of sequence SEQ ID NO: 142, a CDR2-L of sequence KVS, and a CDR3-L of sequence SEQ ID NO: 11;
V D3 consists of the amino acid sequence as set forth in SEQ ID NO: 138, or an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 138, which comprises a CDR1-H of sequence SEQ ID NO: 6, a CDR2-H of sequence SEQ ID NO: 7, and a CDR3-H of sequence SEQ ID NO: 8; and
V D4 consists of the amino acid sequence as set forth in SEQ ID NO: 383, or an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 383, which comprises a CDR1-H of sequence SEQ ID NO: 381, a CDR2-H of sequence SEQ ID NO: 384, and a CDR3-H of sequence SEQ ID NO: 382.
13 : The method of claim 12 , wherein:
(a) the first polypeptide consists of the amino acid sequence as set forth in SEQ ID NO: 388, which comprises V D1 of amino acid sequence SEQ ID NO: 385, L 1 of amino acid sequence SEQ ID NO: 389, V D2 of amino acid sequence SEQ ID NO: 141, L 2 of amino acid sequence SEQ ID NO: 389, and C L of amino acid sequence SEQ ID NO: 310: or an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 388, wherein the three CDRs of amino acid sequences SEQ ID NO: 378, WAS, and SEQ ID NO: 379 of V D1 , and the three CDRs of amino acid sequences SEQ ID NO: 142, KVS, and SEQ ID NO: 11 of V D2 are unaltered; and (b) the second polypeptide consists of the amino acid sequence as set forth in SEQ ID NO: 390, which comprises V D3 of amino acid sequence SEQ ID NO: 138, L 3 is 0 amino acids, V D4 of amino acid sequence SEQ ID NO: 383, L 4 is 0 amino acids, and C H1 of amino acid sequence SEQ ID NO: 313, or an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 390, wherein the three CDRs of amino acid sequences SEQ ID NO: 381, SEQ ID NO: 384, and SEQ ID NO: 382 of V D4 , and the three CDRs of amino acid sequences SEQ ID NO: 6, SEQ ID NO: 7, and SEQ ID NO: 8 of V D3 are unaltered.
14 : The method of claim 12 , wherein the polypeptide of formula [II] further comprises a Fc domain and has a structure represented by formula [III]:
V D3 -L 3 -V D4 -L 4 -C H1 -Fc [III]
wherein the polypeptide of formula [I] further comprises a Fc domain (Fc 2 ) and has a structure represented by formula [IV]:
V D1 -L 1 -V D2 -L 2 -C L -L 5 -Fc 2 [IV]
wherein:
Fc is the immunoglobulin hinge region and CH 2 , CH 3 immunoglobulin heavy chain constant domains of an immunoglobulin,
Fc 2 is the immunoglobulin hinge region and CH 2 , CH 3 immunoglobulin heavy chain constant domains of an immunoglobulin, and
L 5 is an amino acid linker; and
wherein:
(a) the polypeptide according to formula [IV] consists of the amino acid sequence as set forth in SEQ ID NO: 391, which comprises V D1 of amino acid sequence SEQ ID NO: 385, L 1 of amino acid sequence SEQ ID NO: 389, V D1 of amino acid sequence SEQ ID NO: 141, L 2 of amino acid sequence SEQ ID NO: 389, C L of amino acid sequence SEQ ID NO: 310, L 5 which is 0 amino acids, and Fc 2 of amino acid sequence SEQ ID NO: 392; or
an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 391, wherein the three CDRs of amino acid sequences SEQ ID NO: 378, WAS, and SEQ ID NO: 379 of V D1 , and the three CDRs of amino acid sequences SEQ ID NO: 142, KVS, and SEQ ID NO: 11 of V D2 are unaltered; and
(b) the polypeptide according to formula [III] consists of the amino acid sequence as set forth in SEQ ID NO: 393, which comprises V D3 of amino acid sequence SEQ ID NO: 138, L 3 is 0 amino acids, V D4 of amino acid sequence SEQ ID NO: 383, L 4 is 0 amino acids, C H1 of amino acid sequence SEQ ID NO: 313, and Fc of amino acid sequence SEQ ID NO: 394: or
an amino acid sequence that is at least 85% identical to the amino acid sequence as set forth in SEQ ID NO: 393, wherein the three CDRs of amino acid sequences SEQ ID NO: 381, SEQ ID NO: 384, and SEQ ID NO: 382 of V D4 , and the three CDRs of amino acid sequences SEQ ID NO: 6, SEQ ID NO: 7, and SEQ ID NO: 8 of V D3 are unaltered; and
wherein the polypeptide of formula [IV] and the polypeptide of formula [III] form a cross-over light chain-heavy chain pair.
15 : A method of treating a disease or disorder in a subject in need thereof, comprising:
administering to the subject a therapeutically effective amount of an antibody-like binding protein comprising two polypeptide chains that form two antigen-binding sites, wherein: a first polypeptide chain comprises:
a CDR1-L comprising an amino acid sequence as set forth in SEQ ID NO: 378;
a CDR2-L comprising an amino acid sequence WAS:
a CDR3-L comprising an amino acid sequence as set forth in SEQ ID NO: 379;
a CDR4-L comprising an amino acid sequence as set forth in SEQ ID NO: 142:
a CDR5-L comprising an amino acid sequence of KVS; and
a CDR6-L comprising an amino acid sequence as set forth in SEQ ID NO: 11: and
wherein a second polypeptide chain comprises:
a CDR1-H comprising an amino acid sequence as set forth in SEQ ID NO: 6:
a CDR2-H comprising an amino acid sequence as set forth in SEQ ID NO: 7;
a CDR3-H comprising an amino acid sequence as set forth in SEQ ID NO: 8;
a CDR4-H comprising an amino acid sequence as set forth in SEQ ID NO: 381;
a CDR5-H comprising an amino acid sequence as set forth in SEQ ID NO: 384; and
a CDR6-H comprising an amino acid sequence as set forth in SEQ ID NO: 382.
16 : The method of claim 1 , wherein the disease or disorder is cancer or a pathological immune response.
17 : The method of claim 16 , wherein the cancer is a hematological cancer associated with CD123 expression.
18 : The method of claim 17 , wherein the hematological cancer is a leukemia, a malignant lymphoproliferative condition, a blastic plasmacytoid dendritic cell neoplasm (BPDCN), systemic mastocytosis, or a lymphoma.
19 : The method of claim 18 , wherein the leukemia is acute myelogenous leukemia, chronic myelogenous leukemia, acute lymphoid leukemia, chronic lymphoid leukemia, hairy cell leukemia, or myelodysplasia syndrome.
20 : The method of claim 19 , wherein the leukemia is acute myelogenous leukemia.
21 : The method of claim 18 , wherein the lymphoma is multiple myeloma, non-Hodgkin's lymphoma, Burkitt's lymphoma, small cell-follicular lymphoma, or large cell-follicular lymphoma.
22 : The method of claim 16 , wherein the pathological immune response comprises an autoimmune disease, a transplantation-related disease, or an inflammation-associated disease.
23 : The method of claim 22 , wherein the autoimmune disease is Crohn's disease, ulcerative colitis, or type I diabetes.
24 : The method of claim 22 , wherein the transplantation-related disease is graft-versus-host disease (GVHD).
25 : The method of claim 1 , wherein the antibody-like binding protein is comprised within a pharmaceutical composition that further comprises a pharmaceutically acceptable carrier.
26 : The method of claim 1 , wherein the antibody-like binding protein induces T-cell mediated toxicity of CD123 positive tumor cells within the subject.
27 : The method of claim 1 , wherein the antibody-like binding protein induces an immunosuppressive effect in the subject.
28 : A method of treating a disease or disorder in a subject in need thereof, comprising:
administering to the subject a therapeutically effective amount of an antibody-like binding protein that specifically binds to CD3ε and CD123 comprising two polypeptide chains that form two antigen-binding sites, wherein a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 388 and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 390 or the first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 391 and the second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 393.
29 : An isolated antibody that binds to the extracellular domain of human CD3ε protein comprising:
a) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence GFX 1 X 2 X 3 X 4 AW (SEQ ID NO: 331), wherein X 1 is T or S, X 2 is F or V, X 3 is S or T and X 4 is N, K, L, or Y, or any combination thereof; a CDR2-H comprising amino acid sequence IKX 1 X 2 X 3 NX 4 YX 5 T (SEQ ID NO: 332), wherein X 1 is A or D, X 2 is K or R, X 3 is S or A, X 4 is N or S, and X 5 is A or E, or any combination thereof; and a CDR3-H comprising amino acid sequence TWRHYYSSHTMDA (SEQ ID NO: 69), or RALTYYGYKRDAMDG (SEQ ID NO: 129), or RX 1 X 2 X 3 YX 4 X 5 X 6 X 7 X 8 X 9 X 10 X 11 DX 12 (SEQ ID NO: 333), wherein X 1 is Y, G, or A, X 2 is V, T, or L, X 3 is H, N, Y, or Q, X 4 is G, R, or A, X 5 is F or V or no amino acid, X 6 is R or no amino acid, X 7 is F, S, or I or no amino acid, X 8 is F, L, N, M, Y, S, A, or G, X 9 is Y, A, K, S, N, T, F, or L, X 10 is A, P, G, or T, X 11 is M, L, F, or S, and X 12 is A, V, or Y, or any combination thereof; and
a light chain variable domain comprising a CDR1-L comprising amino acid sequence QX 1 LX 2 HX 3 NGX 4 TY (SEQ ID NO: 334) wherein X 1 is R or S, X 2 is V or E, X 3 is N, D, or T, and X 4 is N or Y, or any combination thereof; and a CDR2-L comprising amino acid sequence KVS; and a CDR3-L comprising an amino acid sequence GQGX 1 X 2 YPFT (SEQ ID NO: 335) wherein X 1 is T, A or S and X 2 is H, E or Q, or any combination thereof; or
b) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 30 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 30 by one amino acid substitution; a CDR2-H comprising amino acid sequence SEQ ID NO: 31 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 31 by one or more amino acid substitutions; and a CDR3-H comprising amino acid sequence SEQ ID NO: 32 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 32 by one amino acid substitution; and
a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 34 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 34 by one amino acid substitution; a CDR2-L comprising amino acid sequence RDD or an amino acid sequence differing from the amino acid sequence RDD by one amino acid substitution; and a CDR3-L comprising amino acid sequence SEQ ID NO: 35 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 35 by one amino acid substitution; or
c) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 50 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 50 by one amino acid substitution; a CDR2-H comprising amino acid sequence SEQ ID NO: 51 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 51 by one or more amino acid substitutions; and a CDR3-H comprising amino acid sequence SEQ ID NO: 52 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 52 by one amino acid substitution; and
a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 54 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 54 by one amino acid substitution; a CDR2-L comprising amino acid sequence NAN or an amino acid sequence differing from the amino acid sequence NAN by one amino acid substitution; and a CDR3-L comprising amino acid sequence SEQ ID NO: 55 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 55 by one amino acid substitution; or
d) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 90 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 90 by one amino acid substitution; a CDR2-H comprising amino acid sequence SEQ ID NO: 91 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 91 by one or more amino acid substitutions; and a CDR3-H comprising amino acid sequence SEQ ID NO: 32 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 32 by one amino acid substitution; and
a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 93 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 93 by one amino acid substitution; a CDR2-L comprising amino acid sequence GAS or an amino acid sequence differing from the amino acid sequence GAS by one amino acid substitution; and a CDR3-L comprising amino acid sequence SEQ ID NO: 94 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 94 by one amino acid substitution; or
e) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 96 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 96 by one amino acid substitution; a CDR2-H comprising amino acid sequence SEQ ID NO: 97 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 97 by one or more amino acid substitutions; and a CDR3-H comprising amino acid sequence SEQ ID NO: 98 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 98 by one amino acid substitution; and
a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 100 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 100 by one amino acid substitution, a CDR2-L comprising amino acid sequence NTN or an amino acid sequence differing from the amino acid sequence NTN by one amino acid substitution; and a CDR3-L comprising amino acid sequence SEQ ID NO: 101 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 101 by one amino acid substitution; or
f) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 103 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 103 by one amino acid substitution; a CDR2-H comprising amino acid sequence SEQ ID NO: 104 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 104 by one or more amino acid substitutions; and a CDR3-H comprising amino acid sequence SEQ ID NO: 105 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 105 by one amino acid substitution; and
a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: by one amino acid substitution; a CDR2-L comprising amino acid sequence KVS or an amino acid sequence differing from the amino acid sequence KVS by one amino acid substitution; and a CDR3-L comprising amino acid sequence SEQ ID NO: 11 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 11 by one amino acid substitution; or
g) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 116 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 116 by one amino acid substitution; a CDR2-H comprising amino acid sequence SEQ ID NO: 117 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 117 by one or more amino acid substitutions; and a CDR3-H comprising amino acid sequence SEQ ID NO: 118 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 118 by one amino acid substitution; and
a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 100 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 100 by one amino acid substitution; a CDR2-L comprising amino acid sequence VTN or an amino acid sequence differing from the amino acid sequence VTN by one amino acid substitution; and a CDR3-L comprising amino acid sequence SEQ ID NO: 120 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 120 by one amino acid substitution; or
h) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 122 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 122 by one amino acid substitution; a CDR2-H comprising amino acid sequence SEQ ID NO: 123 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 123 by one or more amino acid substitutions; and a CDR3-H comprising amino acid sequence SEQ ID NO: 124 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 124 by one amino acid substitution; and
a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 126 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 126 by one amino acid substitution; a CDR2-L comprising amino acid sequence RDD or an amino acid sequence differing from the amino acid sequence RDD by one amino acid substitution; and a CDR3-L comprising amino acid sequence SEQ ID NO: 127 or an amino acid sequence differing from the amino acid sequence SEQ ID NO: 127 by one amino acid substitution.
30 : The isolated antibody according to claim 29 , comprising:
a) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 6, a CDR2-H comprising amino acid sequence SEQ ID NO: 7, and a CDR3-H of amino acid sequence SEQ ID NO: 8; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10 or SEQ ID NO: 142, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or b) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 14, and a CDR3-H comprising amino acid sequence SEQ ID NO: 15; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 17 or SEQ ID NO: 184, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or c) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 19, and a CDR3-H comprising amino acid sequence SEQ ID NO: 20; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 22, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or d) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 24, a CDR2-H comprising amino acid sequence SEQ ID NO: 19, and a CDR3-H comprising amino acid sequence SEQ ID NO: 25; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 27; a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 28; or e) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 30, a CDR2-H comprising amino acid sequence SEQ ID NO: 31, and a CDR3-H comprising amino acid sequence SEQ ID NO: 32: and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 34, a CDR2-L comprising amino acid sequence ROD, and a CDR3-L comprising amino acid sequence SEQ ID NO: 35; or f) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 38; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 28; or g) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 41; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 17, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or h) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 44; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or i) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 47; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or j) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 50, a CDR2-H comprising amino acid sequence SEQ ID NO: 51, and a CDR3-H comprising amino acid sequence SEQ ID NO: 52; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 54, a CDR2-L comprising amino acid sequence NAN, and a CDR3-L comprising amino acid sequence SEQ ID NO: 55; or k) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 57, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 58; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 28; or l) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 61; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or m) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 64, a CDR2-H comprising amino acid sequence SEQ ID NO: 65, and a CDR3-H comprising amino acid sequence SEQ ID NO: 47: and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 67, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 28; or n) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 69; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 71; or o) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 84; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 17, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or p) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 75, a CDR2-H comprising amino acid sequence SEQ ID NO: 76, and a CDR3-H comprising amino acid sequence SEQ ID NO: 77; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or q) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 80, a CDR2-H comprising amino acid sequence SEQ ID NO: 76, and a CDR3-H comprising amino acid sequence SEQ ID NO: 81; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or r) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 84; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or s) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 47: and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 88; or t) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 90, a CDR2-H comprising amino acid sequence SEQ ID NO: 91, and a CDR3-H comprising amino acid sequence SEQ ID NO: 32; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 93, a CDR2-L comprising amino acid sequence GAS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 94; or u) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 96, a CDR2-H comprising amino acid sequence SEQ ID NO: 97, and a CDR3-H comprising amino acid sequence SEQ ID NO: 98; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 100, a CDR2-L comprising amino acid sequence NTN, and a CDR3-L comprising amino acid sequence SEQ ID NO: 101; or v) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 103, a CDR2-H comprising amino acid sequence SEQ ID NO: 104, and a CDR3-H comprising amino acid sequence SEQ ID NO: 105; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or w) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 80, a CDR2-H comprising amino acid sequence SEQ ID NO: 19, and a CDR3-H comprising amino acid sequence SEQ ID NO: 108; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or x) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 37, and a CDR3-H comprising amino acid sequence SEQ ID NO: 111; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 113, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 114; or y) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 116, a CDR2-H comprising amino acid sequence SEQ ID NO: 117, and a CDR3-H comprising amino acid sequence SEQ ID NO: 118; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 100, a CDR2-L comprising amino acid sequence VTN, and a CDR3-L comprising amino acid sequence SEQ ID NO: 120; or z) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 122, a CDR2-H comprising amino acid sequence SEQ ID NO: 123, and a CDR3-H comprising amino acid sequence SEQ ID NO: 124; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 126, a CDR2-L comprising amino acid sequence ROD, and a CDR3-L comprising amino acid sequence SEQ ID NO: 127; or aa) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 13, a CDR2-H comprising amino acid sequence SEQ ID NO: 19, and a CDR3-H comprising amino acid sequence SEQ ID NO: 129; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 10, a CDR2-L comprising amino acid sequence KVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 11; or bb) a heavy chain variable domain comprising a CDR1-H comprising amino acid sequence SEQ ID NO: 103, a CDR2-H comprising amino acid sequence SEQ ID NO: 104, and a CDR3-H comprising amino acid sequence SEQ ID NO: 105; and a light chain variable domain comprising a CDR1-L comprising amino acid sequence SEQ ID NO: 133, a CDR2-L comprising amino acid sequence LVS, and a CDR3-L comprising amino acid sequence SEQ ID NO: 134.
31 : An antibody-like binding protein that binds specifically to human CD3ε comprising two polypeptide chains that form two antigen-binding sites, wherein a first polypeptide has a stricture represented by the formula [I]:
VD-L 1 -V D1 -L 2 -C L [I]
and a second polypeptide has a structure represented by the formula [II]:
V D3 -L 3 -V D4 -L 4 -C H1 [II]
wherein:
V D1 is a heavy or light chain variable domain of a first immunoglobulin;
V D2 is a heavy or light chain variable domain of a second immuoglobulin;
V D3 is a heavy or light chain variable domain of the second immunoglobulin;
V D4 is a heavy or light chain variable domain of the first immunoglobulin;
C L is a light chain constant domain of an immunoglobulin;
C H1 is a C H1 heavy chain constant domain of an immunoglobulin;
L 1 , L 2 , L 3 , and L 4 are amino acid linkers;
wherein the first polypeptide and the second polypeptide form a cross-over light chain-heavy chain pair; and
wherein V D1 and V D4 , or V D2 and V D3 comprise a heavy chain variable domain and a light chain variable domain of an antibody according to claim 29 .
32 : The antibody-like binding protein of claim 31 , wherein at least one of polypeptide [III] and polypeptide [IV] further comprises an Fc domain.Join the waitlist — get patent alerts
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