Compositions and methods of treating muscle atrophy and myotonic dystrophy

Abstract

Disclosed herein are polynucleic acid molecules, pharmaceutical compositions, and methods for treating muscle atrophy or myotonic dystrophy.

What is claimed is: 
     
         1 . A small interfering RNA (siRNA) conjugate comprising a binding moiety conjugated to a siRNA that hybridizes to a target sequence in exons  1 - 13  of human DMPK mRNA excluding CUG repeats and mediates RNA interference against the human DMPK mRNA preferentially in a muscle cell in a subject, wherein the siRNA is a double stranded RNA comprising a guide strand and a passenger strand. 
     
     
         2 . The siRNA conjugate of  claim 1 , wherein the siRNA comprises at least one 2′ modified nucleotide, at least one modified internucleotide linkage, or at least one inverted abasic moiety. 
     
     
         3 . The siRNA conjugate of  claim 1 , wherein mediation of RNA interference against the human DMPK mRNA modulates muscle atrophy or myotonic dystrophy in said subject. 
     
     
         4 . The siRNA conjugate of  claim 1 , wherein the binding moiety binds to a receptor on the cell surface of the muscle cell. 
     
     
         5 . The siRNA conjugate of  claim 1 , wherein the guide strand and the passenger strand are 8 to 30 nucleotides in length. 
     
     
         6 . The siRNA conjugate of  claim 1 , wherein the siRNA hybridizes to at least 8 contiguous nucleotides of the target sequence in the exons  1 - 13  of the human DMPK mRNA. 
     
     
         7 . The siRNA conjugate of  claim 1 , wherein the siRNA conjugate comprises a linker connecting the binding moiety to the siRNA. 
     
     
         8 . The siRNA conjugate of  claim 2 , wherein the at least one 2′ modified nucleotide:
 comprises 2′-O-methyl, 2′-O-methoxyethyl (2′-O-MOE), 2′-O-aminopropyl, 2′-deoxy, 2′-deoxy-2′-fluoro, 2′-O-aminopropyl (2′-O-AP), 2′-O-dimethylaminoethyl (2′-O-DMAOE), 2′-O-dimethylaminopropyl (2′-O-DMAP), 2′-O-dimethylaminoethyloxyethyl (2′-O-DMAEOE), or 2′-O—N-methylacetamido (2′-O-NMA) modified nucleotide; 
 comprises locked nucleic acid (LNA) or ethylene nucleic acid (ENA); or 
 comprises a combination thereof. 
 
     
     
         9 . The siRNA conjugate of  claim 2 , wherein the at least one modified internucleotide linkage comprises a phosphorothioate linkage or a phosphorodithioate linkage. 
     
     
         10 . The siRNA conjugate of  claim 2 , wherein the siRNA comprises three or more 2′ modified nucleotides selected from 2′-O-methyl modified nucleotide and 2′-deoxy-2′-fluoro modified nucleotide. 
     
     
         11 . The siRNA conjugate of  claim 1 , wherein the siRNA conjugate has a drug to binding moiety ratio of from about 1 to about 4. 
     
     
         12 . The siRNA conjugate of  claim 1 , wherein the siRNA comprises a 5′-terminal vinylphosphonate modified nucleotide. 
     
     
         13 . The siRNA conjugate of  claim 1 , wherein the binding moiety is a polypeptide or a peptide. 
     
     
         14 . The siRNA conjugate of  claim 13 , wherein the polypeptide or the peptide is selected from a plasma protein and a bicyclic peptide. 
     
     
         15 . The siRNA conjugate of  claim 1 , wherein the binding moiety is a steroid, a polymer, a small molecule, or a polynucleic acid that does not hybridize to a target gene or mRNA. 
     
     
         16 . The siRNA conjugate of  claim 3 , wherein the muscle atrophy is associated with myotonic dystrophy type 1 (DM1). 
     
     
         17 . The siRNA conjugate of  claim 3 , wherein the myotonic dystrophy is DM1. 
     
     
         18 . The siRNA conjugate of  claim 1 , wherein the siRNA conjugate is formulated for parenteral administration. 
     
     
         19 . The siRNA conjugate of  claim 1 , wherein the guide strand is selected from a group consisting of SEQ ID NOs: 6111-8814 and 11519-14222. 
     
     
         20 . The siRNA conjugate of  claim 1 , wherein the passenger strand is selected from a group consisting of SEQ ID NOs: 3407-6110 and 8815-11518. 
     
     
         21 . The siRNA conjugate of  claim 1 , wherein the guide strand that hybridizes to a target sequence in exons  2 - 13  of the human DMPK mRNA is selected from SEQ ID NOs: 11903, 11961, 11962, 11963, 12051, 12052, 12053, 12057, 12058, 12059, 12061, 12062, 12094, 12095, 12099, 12101, 12102, 12208, 12234, 12235, 12303, 12304, 12307, 12544, 12545, 12546, 12547, 12555, 12557, 12559, 12561, 12562, 12565, 12589, 12591, 12780, 12781, 12782, 12783, 12785, 12786, 12787, 12792, 12794, 12801, 12815, 12860, 12861, 12862, 12864, 13343, 13404, 13408, 13416, 13463, 13478, 13644, 13645, 13667, 13668, 13786, 13790, 14046, 14047, 14048, 14049, 14050, 14072, 14076, 14118, 14146, 14147, 14149, 14154, 14157, 14193, 14194, 14197, 14198, 14199, and 14200. 
     
     
         22 . The siRNA conjugate of  claim 1 , wherein the passenger strand that hybridizes to a target sequence in exons  2 - 13  of the human DMPK mRNA is selected from SEQ ID NOs: 9199, 9257, 9258, 9259, 9347, 9348, 9349, 9353, 9354, 9355, 9357, 9358, 9390, 9391, 9395, 9397, 9398, 9504, 9530, 9531, 9599, 9600, 9603, 9840, 9841, 9842, 9843, 9851, 9853, 9855, 9857, 9858, 9861, 9885, 9887, 10076, 10077, 10078, 10079, 10081, 10082, 10083, 10088, 10090, 10097, 10111, 10156, 10157, 10158, 10160, 10639, 10700, 10704, 10712, 10759, 10774, 10940, 10941, 10963, 10964, 11082, 11086, 11342, 11343, 11344, 11345, 11346, 11368, 11372, 11414, 11442, 11443, 11445, 11450, 11453, 11489, 11490, 11493, 11494, 11495, and 11496. 
     
     
         23 . The siRNA conjugate of  claim 21 , wherein the guide strand that hybridizes to a target sequence in exons  4 ,  5 , and  6  of the human DMPK mRNA is selected from SEQ ID NOs: 12102, 12234, 12303, 12304, and 12307. 
     
     
         24 . The siRNA conjugate of  claim 22 , wherein the passenger strand that hybridizes to a target sequence in exons  4 ,  5 , and  6  of the human DMPK mRNA is selected from SEQ ID NOs: 9398, 9530, 9599, 9600, and 9603. 
     
     
         25 . The siRNA conjugate of  claim 21 , wherein the guide strand that hybridizes to a target sequence in exons  7  and  8  of the human DMPK mRNA is selected from SEQ ID NOs: 12544, 12545, 12546, 12547, 12555, 12557, 12559, 12561, 12562, 12565, 12589, 12783 and 12815. 
     
     
         26 . The siRNA conjugate of  claim 22 , wherein the passenger strand of the siRNA that hybridizes to a target sequence in exons  7  and  8  of the human DMPK mRNA is selected from SEQ ID NOs: 9840, 9841, 9842, 9843, 9851, 9853, 9855, 9857, 9858, 9861, 9885, 10079 and 10111. 
     
     
         27 . The siRNA conjugate of  claim 21 , wherein the guide strand of the siRNA that hybridizes to a target sequence in exon  9  of the human DMPK mRNA is selected from SEQ ID NOs: 12860, 12861, 12862, and 12864. 
     
     
         28 . The siRNA conjugate of  claim 22 , wherein the passenger strand that hybridizes to a target sequence in exon  9  of the human DMPK mRNA is selected from SEQ ID NOs: 10156, 10157, 10158, and 10160. 
     
     
         29 . The siRNA conjugate of  claim 21 , wherein the guide strand that hybridizes to a target sequence in exon  13  of the human DMPK mRNA is selected from SEQ ID NOs: 13343, 13463, 13478, 14047, 14048, 14049, 14072, 14146, 14147, 14199, and 14200. 
     
     
         30 . The siRNA conjugate of  claim 22 , wherein the passenger strand that hybridizes to a target sequence in exon  13  of the human DMPK mRNA is selected from SEQ ID NOs: 10639, 10759, 10774, 11343, 11344, 11345, 11368, 11442, 11443, 11495, and 11496. 
     
     
         31 . A method of treating myotonic dystrophy in a subject in need thereof, comprising:
 administering to said subject a therapeutically effective amount of a small interfering RNA (siRNA) conjugate comprising a binding moiety conjugated to a siRNA that hybridizes to a target sequence in exons  1 - 13  of human DMPK mRNA excluding CUG repeats, wherein the siRNA is 8 to 30 nucleotides in length, thereby treating myotonic dystrophy in said subject.   
     
     
         32 . The method of  claim 31 , wherein the myotonic dystrophy is myotonic dystrophy type 1 (DM1).